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I guess the current model v2 (https://storage.googleapis.com/cue-models/latest/cue.v2.pt) does not include support for linked read signals? If so, is there any plan to support this in a coming model? …
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Hi!
I am trying to use Aquila_stLFR for an animal species. My reference fasta has chromosome names like Scaffold_[number], not chr[number].
Preprocessing was OK, but on step1 I get errors:
``…
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Hi,
Recently, I applicated stLFR sequencing in nasal samples, and I tried to assemble these metagenomes reads with MetaTrass, something errors occured in Step2, the log are following:
`{'sub…
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Good afternoon,
In the config file for `MKFQ`, there is a final parameters `Barcode_Length`. In the example files provided by google drive, the barcode length is `54` for the 10x example. I have so…
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Hello, I'm interested in incorporating this tool into [Harpy](https://www.github.com/pdimens/harpy), which is specific to haplotagging-style linked reads. The documentation provides the option for 10x…
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Hi,
I'm using GapClose, so can you show me -b input library info file name, required?
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你好，我使用示例文件测试时遇到了错误
我输入的文件是https://github.com/BGI-Qingdao/stlfr2supernova_pipeline里的两个。Appendix B : an example of stLFR reads
这是我的运行命令
python3 /software/de_nova_pipeline/stlfr2supernova/clean_st…
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I used the following command.
python3 clean_stlfr2supernova_pipline.py -r1 stlfr_1.fq.gz -2 stlfr_2.fq.gz -supernova path/supernova/ -s path_to_this_program/folder -o log_ out (my data is indeed the …
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Add support to other available linked-read plattforms:
- [x] ~~CPTv2~~ (Will not be added as no longer relevant)
- [x] stLFR=BGI linked reads
- [x] Tell-seq
- [ ] Haplotagging
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## User story
>As an admin user
>I want to be informed by the website of erroneous attributes being used
>So that I can correct my mistake
## Acceptance criteria
>Given I am editing a sam…