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PopicLab
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cue
Deep learning framework for SV calling and genotyping
MIT License
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bcftools: undefined symbol: cblas_ctrmv
#34
leajf4
closed
1 month ago
0
Does cue have any recommended genotyping software
#33
zhujiahua700403
closed
2 months ago
0
Does cue apply to non-human species
#32
zhujiahua700403
opened
5 months ago
0
Low number of SVs
#31
lubertorubior
opened
5 months ago
0
installation error
#30
leon945945
opened
7 months ago
1
Could you please provide a tutorial notebook or docker image for generating image datasets from scratch?
#29
kuro7766
opened
9 months ago
1
add_by_signal function error when running call.py
#28
bbunce
closed
9 months ago
2
Request for a docker image
#27
sdemirci
opened
10 months ago
1
KeyError: 'None-HET'
#26
kuro7766
closed
9 months ago
1
getting Cue to work in other species
#25
jkalleberg
closed
1 year ago
1
How to translate the vcf result to the type same to the type such as manta and delly
#24
ld9866
closed
9 months ago
1
the difference among cue-synth-datasets/benchmarks/basic/cue/linked, long and short?
#23
jingydz
opened
1 year ago
0
Tutorial Error
#22
jkalleberg
closed
1 year ago
1
pysam pysam/libcbcf.pyx error when opening vcf.format file
#21
minjaf
opened
1 year ago
2
Linked reads model
#20
pontushojer
opened
1 year ago
6
cue application on exome
#19
marcelamtrucco
closed
1 year ago
1
TypeError: only integer tensors of a single element can be converted to an index
#18
shenweima
opened
1 year ago
3
How to integrate the results of multiple individuals？
#17
shenweima
opened
1 year ago
0
ModuleNotFoundError: No module named 'engine'
#16
shenweima
closed
1 year ago
2
Package cue to make it installable
#15
pontushojer
opened
1 year ago
0
0 Selected intervals and empty VCF output when running Cue on PacBio CLR
#14
LYC-vio
closed
1 year ago
4
LINKED mode of cue
#13
KeqingWangg
closed
1 year ago
3
Internal parameter default setting
#12
viq854
closed
1 year ago
0
Docker Install Error
#11
543090lee
opened
1 year ago
0
Index reduction and breakpoint refinement
#10
viq854
closed
1 year ago
0
Issue while outputting the svs.vcf file
#9
sivianil
closed
1 year ago
5
Update plotting.py
#8
sivianil
closed
1 year ago
3
Switch to GCS for Cue data
#7
viq854
closed
1 year ago
0
Streaming mode support for index generation
#6
viq854
closed
1 year ago
0
Genome scanning and infrastructure updates
#5
viq854
closed
1 year ago
0
Error message _pickle.UnpicklingError: invalid load key, 'v'.
#4
williamphu
closed
1 year ago
1
Error message `_pickle.UnpicklingError: invalid load key, 'v'.` in the SV calling step
#3
LorenaDerezanin
closed
1 year ago
1
Use with long-reads
#2
Akazhiel
closed
1 year ago
1
Create ci.yml
#1
viq854
closed
1 year ago
0