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Hi,
I am having huge issues while running the iscope. I have a set of models created with m2m recon and then the pgdb files were compiled into a sbml with the function [metage2metabo.sbml_managemen…
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Hello as indicated before by others [https://github.com/changwn/scFEA/issues/37#issue-1701977826](url)
the moduleGene_file for lipid metabolism is missing. Only the stoichiometry matrix is available.…
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The constituents of a multi-sublattice phase listed in a DAT can be chemically complex or contain information about the charge state of the constituent, or really anything else at all. [See here for a…
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We should evaluate the generated Rhea-based logical definition pattern for catalytic activities, as far as how much it supports automatic inference of membership for GO-CAM MF nodes. E.g.:
```
ma…
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Are there plans to support symbolic coefficients in stoichiometry matrix construction? For example, I have a birth-death process where $M$ is produced in bursts that are geometrically distributed:
``…
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There is at least one reaction that has strange differences between the text files in bin and the XML file MODEL1603150001.xml. Specifically, the reaction R_FAOXC220200x (there might be others, I'm se…
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Given how FEFF writes the pot.inp file, stoichiometries of 10^6 or larger end up spilling over into the lmaxsc column.
**feff.inp**
```
results…
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### Description
Calling `pybamm.ParameterValues.create_from_bpx()` with a BPX file containing a blended electrode returns a warning as follows:
`Initial concentrations cannot be set using stoichio…