SciML Catalyst.jl issues

SciML / Catalyst.jl

Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software.

https://docs.sciml.ai/Catalyst/stable/

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issues

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Deficiency one and concnetration robustness

#964 vyudu opened 1 week ago
0
Strong and terminal linkage classes

#963 vyudu opened 1 week ago
0
CompatHelper: bump compat for OptimizationBBO to 0.3 for package docs, (keep existing compat)

#962 github-actions[bot] opened 1 week ago
0
CompatHelper: bump compat for DynamicPolynomials to 0.6, (keep existing compat)

#961 github-actions[bot] opened 1 week ago
0
CompatHelper: bump compat for Catalyst to 13 for package docs, (keep existing compat)

#960 github-actions[bot] opened 2 weeks ago
0
[v14 ready] Mark regressed mtk tests as broken

#959 TorkelE closed 2 weeks ago
0
[v14 - ready] Doc figure display performance update

#958 TorkelE closed 2 weeks ago
0
[v14 - Awaiting MTK fix] Tests for vector valued species/parameters

#957 TorkelE closed 2 weeks ago
0
[v14 - Awaiting Catalyst update] New default prob update tests

#956 TorkelE closed 2 weeks ago
0
[v14] Conservation law warnings

#955 TorkelE closed 2 weeks ago
1
Error with vector arguments

#954 TorkelE closed 2 weeks ago
5
Tests for conservation laws and `remake`

#953 TorkelE closed 2 weeks ago
3
Summary of breakages when updating problems with conservation laws

#952 TorkelE opened 2 weeks ago
17
Update to general namespace separator

#951 ChrisRackauckas closed 2 weeks ago
0
Better doc plot display performance

#950 TorkelE closed 2 weeks ago
3
update unicode "₊" separator to "."

#949 isaacsas opened 2 weeks ago
4
Handle figure in Catalyst introduction which affects build times

#948 TorkelE closed 2 weeks ago
18
Enabling creation of bundled reactions (using vector variables/parameters)

#947 TorkelE opened 2 weeks ago
3
[Non-urgent, Ready] Tutorial on periodic events

#946 TorkelE opened 2 weeks ago
0
unit problems in tests

#945 isaacsas closed 2 weeks ago
1
fix Catalyst using warning

#944 isaacsas closed 2 weeks ago
8
[WIP] Fix remaining doc issues

#943 TorkelE closed 2 weeks ago
3
Tracker of issues related to broken tests

#942 TorkelE opened 2 weeks ago
1
link errors in doc builds

#941 isaacsas closed 2 weeks ago
2
Fix parametric stoich tutorial

#940 isaacsas closed 2 weeks ago
1
type of parameters not always preserved with symbolic indexing

#939 isaacsas closed 2 weeks ago
6
fix jump internals test

#938 isaacsas closed 2 weeks ago
1
Add warning to ReactionSystem field list

#937 TorkelE closed 2 weeks ago
0
show in a tutorial how to do periodic events with jumps

#936 isaacsas opened 3 weeks ago
1
remake for ReactionSystems

#935 isaacsas opened 3 weeks ago
0
[v14 - Ready] Migration guide and fixes to history file

#934 TorkelE opened 3 weeks ago
1
[v14 - Ready] Fixes latexify tests

#933 TorkelE closed 3 weeks ago
0
Display issues for vector variables/parameters in Latexify

#932 TorkelE opened 3 weeks ago
0
`ReactionSystem` serialisation update

#931 TorkelE closed 3 weeks ago
0
[v14 - Ready] Go through broken tests

#930 TorkelE closed 2 weeks ago
2
[v14 - Ready] Fix bug where `expand_registered_functions` mutated original reaction system

#929 TorkelE closed 2 weeks ago
2
[v14 - Ready] Fix deprecated method usage and unnecessary prints while tests run

#928 TorkelE closed 3 weeks ago
0
missing new line in Latexify display after last equation in sytstems with reactions an equations

#927 TorkelE opened 3 weeks ago
0
Ensure all footnote entries are referenced

#926 TorkelE closed 3 weeks ago
0
[v14 - Ready] Remove empty cross references

#925 TorkelE closed 3 weeks ago
1
Update warn only

#924 TorkelE closed 3 weeks ago
4
Fix runtest file

#923 TorkelE closed 3 weeks ago
1
turn off that warnings do not lead to doc failures

#922 isaacsas closed 3 weeks ago
3
Proposed constraint equations doc changes

#921 TorkelE closed 3 weeks ago
0
proposed intro to Catlayst changes

#920 TorkelE closed 3 weeks ago
0
Update smol tutorial

#919 isaacsas closed 3 weeks ago
1
New `Reaction` inputs update

#918 TorkelE closed 3 weeks ago
0
doc updates

#917 TorkelE closed 3 weeks ago
0
[WIP] Formating

#916 TorkelE closed 3 weeks ago
2
Misc updates to reaction system serialisation function

#915 TorkelE closed 3 weeks ago
2