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I ran rnabloom on several of my input files individually. out of my 10 samples, it did not produce any transcriptome file for 2 of them. Why is that? It finished running but there are no output files.…
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Hello, I'm having problems with the program compiled through the source code running much slower than the version installed by bioconda.
### **Running environment:**
AMD EPYC 7T83, 64 * 2 cores (s…
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Hello!
Here is the issue I am facing when trying to add a .fa file for a specific locus to db (locityper add).
[12:07:40 ESC[36mDEBUGESC[0m] locityper add -d HG03516/db/ -s HG03516/HG03516_MUC5…
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Here is my to-do list for making strobealign work with references with more than $2^{32}$ strobemers. This will resolve #277 and #285.
- [x] Counters (unique strobemers, total no. of strobemers etc…
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Hello, I can't seem to go past stage 2 whenever I try to use `RNA-Bloom2` with ONT long-read RNA-Seq data.
`RNA-Bloom2` Input CMD:
```
#n.b.1, `.` directory contains combined reads of ONT long-re…
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As discussed in #272, it may be appropriate to add 75 as a new canonical read length.
I did an extensive search for a good set of parameters that improves accuracy over the existing one.
Reads o…
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Hello,
I want to align kmers of length 100 (simulating small reads) to reference genomes. I ran the following command on a file:
```
strobealign -U -t 32 ref_genomes.fa.gz chunked_kmers.fa.gz -o st…
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It‘s a very good idea!!!But I still have some confusion of it.First,why do we finally choose the randstrobe as the method to construct the strobemers?How do the other two methods perform?Second,why we…
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Hi @ksahlin,
Thanks for the great tool. What would be your recommendations for generating as many alignments as possible for a given read. bwa has an `-a` option for outputting all alignments - these…
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Hi, I'm using strobealing to test alignment performance and I get this error from samtools view command with sam created by strobealign (see below command and output) The .fna reference file is _Homo…