bcgsc RNA-Bloom issues - Githubissues

bcgsc / RNA-Bloom

:hibiscus: reference-free transcriptome assembly for short and long reads

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BoundsException

#82 YIGUIz opened 3 weeks ago
1
DBG construction from short and long reads

#81 SimonHegele opened 1 month ago
2
About multi-tissue assembly

#80 YIGUIz opened 2 months ago
8
Containerized rnabloom returning "Unsupported file format detected" error for fastq.gz files when used with Nextflow

#79 tonyaseverson closed 3 months ago
2
Error assembling long read PacBio, no overlaps

#78 A-pcd opened 3 months ago
3
Best practices for pre-processing prior to assembly

#77 patrickaoude opened 3 months ago
6
Long reads genome guided

#76 sagnikbanerjee15 opened 3 months ago
1
is the assembly deterministic?

#75 alexyfyf closed 4 months ago
3
Improving Sensitivity for Similar Isoform Assembly and Handling PacBio HiFi RNA Reads Without Polishing

#74 zhenyu7500 closed 4 months ago
3
assembling nanopore sequenced bacterial transcriptomes

#73 bioinfo17 opened 5 months ago
1
error in assembling ONT DRS long reads

#72 nmrt-sahu opened 6 months ago
1
reduce redundancy in direct RNA long-read only assembly?

#71 mjudd8 opened 6 months ago
1
Consensus transcriptome de novo with multiple samples

#70 nriareal opened 7 months ago
1
RAM requirements. What is the minimum?

#69 nriareal closed 3 months ago
2
Question about assemble long-read sequencing data with short-read polishing

#68 huawen-poppy opened 9 months ago
3
Can output be used for DE analysis?

#67 kzudock closed 10 months ago
2
Resolve Racon Conflict with Numeric Named Reads

#66 ad3002 opened 10 months ago
3
question about the output

#65 huawen-poppy closed 9 months ago
2
can rnabloom run from stage 3?

#64 huawen-poppy closed 11 months ago
2
Errors (reading file and I/O) for one of 9 pooled assemblies

#63 tonyaseverson closed 11 months ago
11
RNABloom not creating transcriptome files

#62 dvirdi01 closed 3 months ago
3
Exception in thread "main" java.lang.OutOfMemoryError: Java heap space

#61 nityendra21 closed 1 year ago
4
Java out of memory exception

#60 dvirdi01 closed 3 months ago
3
Inputting multiple long-read files at once

#59 dvirdi01 closed 3 months ago
3
conda install url not working

#58 dvirdi01 closed 1 year ago
1
Transcriptome assembly from ONT direct RNA sequencing seems to be incomplete

#57 OliviaAgatha closed 3 months ago
9
Q. Error in extracting unique reads at Stage 3 (Assembling long reads for "rnabloom")

#56 alexander-ahn closed 1 year ago
4
Improve hairpin/palindrome removal in long-read assembly

#55 kmnip opened 1 year ago
0
Output error message for pooled assembly of single-end reads

#54 kmnip opened 1 year ago
0
questions about how to get genes from the output

#53 alexyfyf opened 1 year ago
4
RNA-Bloom2 version

#52 ARW-UBT closed 1 year ago
1
Feature request: long-read reference-guided assembly

#51 oneillkza opened 2 years ago
0
ERROR: Error during redundancy reduction!

#50 xiekunwhy closed 3 months ago
1
Problem parsing fasta file

#49 JC-therea closed 2 years ago
3
RNA-Bloom Generates Empty FASTA Without Error

#48 schorlton closed 1 year ago
8
Feature Request: More verbose logging?

#47 schorlton closed 1 year ago
1
Transcript headers follow different formats

#46 schorlton closed 1 year ago
3
Fix bug when read names contain `/`

#45 kmnip closed 1 year ago
0
ERROR: Incorrect FASTA header format

#44 schorlton closed 2 years ago
1
ERROR: For input string: "9223372036854775808"

#43 schorlton closed 1 year ago
6
ERROR: Infinite or NaN

#42 schorlton closed 2 years ago
5
We really need to keep E0.L. sequence?

#41 xiekunwhy closed 2 years ago
3
Release memory before redundancy reducing step.

#40 xiekunwhy closed 2 years ago
5
java.lang.RuntimeException: java.lang.StringIndexOutOfBoundsException: String index out of range: -1

#39 xiekunwhy closed 2 years ago
9
instruction about the output file

#38 zhaocheng3326 closed 2 years ago
1
Assemble multipple bulk RNA samples

#37 xiekunwhy closed 2 years ago
3
Improved README: Add output files description

#36 Ebedthan closed 2 years ago
2
How to restart a failed run

#35 jesgomez closed 1 year ago
1
3'UTR transgene identification from 10x scRNAseq reads

#34 auesro closed 2 years ago
36
FastQ gzipped files not accepted as input?

#33 auesro closed 2 years ago
8