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Hi,
Does sawfish support to call somatic Svs in tumor/normal paired samples?
Best regards.
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It's not very clear to me how exactly VG or Giraffe carries out SV calling (if it truly does). The tutorials mention how we can do genotyping using existing SV calls, but I was wondering if VG or Gira…
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Hi,
I was just wondering if there is any specific methodology that needs to be followed before calling SVs on sex chromosomes using sniffles2? I am using a reference genome for SV calling in human…
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Hi,
This issue is a suggestion more than a problem. Adding an option to call exclusively SVs (and maybe also exclusively SNVs or INDELs) would be useful to save time. For example, I'm only interes…
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I am trying to convert a HAL file from progressive cactus into a vg graph for structural variant calling using vg. Here are the steps I have used
```
hal2vg --refGenomes PWN --noAncestors --h…
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/
I run the genome of a plant through the second step and it just ends.
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Hi Brent,
We have a collection of Structural Variant VCF files produced by Illumina Dragen.
These are per sample, not yet in a multi-sample "squared off" format.
I tried to run Smoove popula…
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**1. What were you trying to do?**
calling structural variation after mapping long-read data on whole genome pangenome graph
**2. What did you want to happen?**
create a VCF file which contai…
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Hi guys, ESBMC reports some "incorrect false" in `ConcurrencySafety-MemSafety`: https://sv-comp.sosy-lab.org/2024/results/results-verified/esbmc-kind.2023-11-30_21-33-41.results.SV-COMP24_valid-memsaf…
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Hi, may I know what is the default read coverage cut-off parameter for SV calling? And if I am able to adjust it?
Thanks
cy