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Hi, thanks for creating this tool!
I have a few questions about how to create the input files and what the output represents:
1. I understand I should convert TCGA .svs files to .tif using this sc…
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Hello,
I am doing some analyses using TCGA data and noticed that the recommendation is to download the pre-calculated xCell data. However, I noticed that this data does not include normal (NT) samp…
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Hello!
Thank you for the benchmark! From your paper, you used data described at [phs000178.v11.p8](https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000178.v11.p8)? From that …
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Dear Professor,
I am currently planning to analyze transcriptome data from The Cancer Genome Atlas (TCGA) project using this R package for my analysis. Given the various data transformation options…
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Could you please provide the `TCGA_RCC` and `TCGA_Lung` datasets through an alternative method, such as Google Drive? I have encountered difficulties downloading them from the provided [link](https://…
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**Error occurred:**
Prov-gigapath main \ finetune \ training -->evaluate function
```
def evaluate(loader, model, fp16_scaler, loss_fn, epoch, args):
model.eval()
# set the evaluatio…
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What are the chances the TCGA data used in the README or the code used to collect it from TCGAbiolinks could be made available?
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Hi,
Not an issue, but a question regarding TCGA batch-corrected expression data. Where i can download the most recent batch corrected pancancer TCGA RNA-seq expression data? Not individual cancers,…
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# primary tasks
- [x] download TCGA MAF files
- [x] Map TCGA rows to proteins from our datasets
- DONT INCLUDE KIBA UNTIL WE GET ALL AFLOW CONFS (to ensure consistent test sets and so we don't …
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**Title:** Automatically label medical data from diagnosis reports
**Project Lead:** Frank Langbein, frank@langbein.org
**Description:** We wish to automatically label medical diagnosis data (MRI,…