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jyaacoub
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MutDTA
Improving the precision oncology pipeline by providing binding affinity purtubations predictions on a pirori identified cancer driver genes.
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Distribution level analysis for TCGA with mapped prots
#111
jyaacoub
opened
1 week ago
3
Build sequence alignment tool for extracting binding pocket index positions from a sequence given a binding pocket sequence from KLIFS
#110
jyaacoub
opened
1 week ago
0
Build Downloader for getting binding pocket sequences from KLIFS
#109
jyaacoub
closed
1 week ago
1
Development
#108
jyaacoub
closed
1 week ago
0
Ensure consistent test sets
#107
jyaacoub
closed
1 week ago
1
Development
#106
jyaacoub
closed
2 weeks ago
0
Development
#105
jyaacoub
closed
2 weeks ago
0
Development
#104
jyaacoub
closed
3 weeks ago
0
Pocket representation
#103
jyaacoub
opened
4 weeks ago
0
missing amino acids
#102
jyaacoub
opened
1 month ago
0
chore(deps): bump requests from 2.31.0 to 2.32.2 in /docs
#101
dependabot[bot]
closed
4 weeks ago
0
Development
#100
jyaacoub
closed
1 month ago
0
Get input data for TCGA (MSAs and aflow confirmations + ligands from our dbs)
#99
jyaacoub
opened
1 month ago
3
How transferable is our model?
#98
jyaacoub
opened
1 month ago
0
feat(download): cids + CHEMBL for sdf download via pubchem #94 #27
#97
jyaacoub
closed
1 month ago
0
Platinum analysis figures and TCGA init #94 and #95
#96
jyaacoub
closed
1 month ago
0
TCGA analysis
#95
jyaacoub
opened
1 month ago
4
Platinum analysis
#94
jyaacoub
opened
1 month ago
5
Look into how to use DeepSpeed for inference instead of FSDP
#93
jyaacoub
closed
2 months ago
3
GVPL x aflow and aflow_ring3 implementation and results
#92
jyaacoub
closed
2 months ago
0
RuntimeError with GVP on DDP training (unused parameters)
#91
jyaacoub
closed
1 month ago
2
Implement and test GVP alternative
#90
jyaacoub
opened
3 months ago
5
Memory issues for AlphaFlow
#89
jyaacoub
closed
1 month ago
3
fix: reduce size of repo by removing irrelevant model pred
#88
jyaacoub
closed
3 months ago
0
fix: reduce size of repo by removing irrelevant model pred
#87
jyaacoub
closed
3 months ago
0
Improve performance of PDB parser
#86
jyaacoub
closed
1 month ago
0
RING3 + AlphaFlow Confirmations
#85
jyaacoub
closed
3 months ago
0
Setup AlphaFlow
#84
jyaacoub
closed
3 months ago
4
Using LIME to explain model
#83
jyaacoub
closed
3 months ago
0
fix(datasets): pdbbind cmap update for using pids
#82
jyaacoub
closed
4 months ago
0
Development
#81
jyaacoub
closed
4 months ago
0
Missing AF2 Confirmations for PDBbind
#80
jyaacoub
closed
4 months ago
5
Development
#79
jyaacoub
closed
4 months ago
0
Improve davis and kiba MSA input files
#78
jyaacoub
closed
3 months ago
2
Use RING features
#77
jyaacoub
closed
3 months ago
4
Explore MISATO dataset
#76
jyaacoub
closed
4 months ago
1
Clean up files
#75
jyaacoub
closed
5 months ago
0
Check train split proteins for davis based on sequence
#74
jyaacoub
closed
1 month ago
1
Overlap between Davis, kiba and PDBbind
#73
jyaacoub
closed
5 months ago
0
chore: delete unused files and clean up directory
#72
jyaacoub
closed
5 months ago
0
Development
#71
jyaacoub
closed
5 months ago
0
build(deps): bump transformers from 4.31.0 to 4.36.0 in /docs
#70
dependabot[bot]
closed
6 months ago
0
Analysis of Protein cluster model differences #57
#69
jyaacoub
closed
5 months ago
2
Implement RayTune for DDP
#68
jyaacoub
closed
6 months ago
4
Development
#67
jyaacoub
closed
6 months ago
0
Misleading Violin plot
#66
jyaacoub
closed
7 months ago
1
Development
#65
jyaacoub
closed
7 months ago
0
Figures for final report
#64
jyaacoub
closed
7 months ago
0
Fix SaProt loading and creation for training
#63
jyaacoub
closed
7 months ago
0
Cross-val results for kiba and PDBbind
#62
jyaacoub
closed
7 months ago
0
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