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jyaacoub
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MutDTA
Improving the precision oncology pipeline by providing binding affinity purtubations predictions on a pirori identified cancer driver genes.
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fix: reduce size of repo by removing irrelevant model pred
#88
jyaacoub
closed
6 months ago
0
fix: reduce size of repo by removing irrelevant model pred
#87
jyaacoub
closed
6 months ago
0
Improve performance of PDB parser
#86
jyaacoub
closed
4 months ago
0
RING3 + AlphaFlow Confirmations
#85
jyaacoub
closed
6 months ago
0
Setup AlphaFlow
#84
jyaacoub
closed
6 months ago
4
Using LIME to explain model
#83
jyaacoub
closed
6 months ago
0
fix(datasets): pdbbind cmap update for using pids
#82
jyaacoub
closed
7 months ago
0
Development
#81
jyaacoub
closed
7 months ago
0
Missing AF2 Confirmations for PDBbind
#80
jyaacoub
closed
7 months ago
5
Development
#79
jyaacoub
closed
7 months ago
0
Improve davis and kiba MSA input files
#78
jyaacoub
closed
6 months ago
2
Use RING features
#77
jyaacoub
closed
6 months ago
4
Explore MISATO dataset
#76
jyaacoub
closed
8 months ago
1
Clean up files
#75
jyaacoub
closed
8 months ago
0
Check train split proteins for davis based on sequence
#74
jyaacoub
closed
4 months ago
1
Overlap between Davis, kiba and PDBbind
#73
jyaacoub
closed
8 months ago
0
chore: delete unused files and clean up directory
#72
jyaacoub
closed
8 months ago
0
Development
#71
jyaacoub
closed
8 months ago
0
build(deps): bump transformers from 4.31.0 to 4.36.0 in /docs
#70
dependabot[bot]
closed
9 months ago
0
Analysis of Protein cluster model differences #57
#69
jyaacoub
closed
8 months ago
2
Implement RayTune for DDP
#68
jyaacoub
closed
9 months ago
4
Development
#67
jyaacoub
closed
9 months ago
0
Misleading Violin plot
#66
jyaacoub
closed
10 months ago
1
Development
#65
jyaacoub
closed
10 months ago
0
Figures for final report
#64
jyaacoub
closed
10 months ago
0
Fix SaProt loading and creation for training
#63
jyaacoub
closed
10 months ago
0
Cross-val results for kiba and PDBbind
#62
jyaacoub
closed
10 months ago
0
Statannotator indexing issue
#61
jyaacoub
closed
10 months ago
0
Grouped Cross-Validation
#60
jyaacoub
closed
10 months ago
6
Ligand dev
#59
jyaacoub
closed
10 months ago
0
Development
#58
jyaacoub
closed
10 months ago
0
stratify performance by protein type
#57
jyaacoub
closed
8 months ago
12
results: davis-shannon CV #46
#56
jyaacoub
closed
10 months ago
0
Development
#55
jyaacoub
closed
11 months ago
0
feat: ChemGPT ligand model
#54
jyaacoub
closed
11 months ago
0
Try structural aware vocabulary (SaProt)
#53
jyaacoub
closed
8 months ago
3
Fix Model key for DGraphDTALigand
#52
jyaacoub
closed
11 months ago
0
Development
#51
jyaacoub
closed
11 months ago
0
Add cutoff for sequence length (helps with mem issues with ESM)
#50
jyaacoub
closed
11 months ago
2
Implement data loading for each fold for training
#49
jyaacoub
closed
11 months ago
0
How to incorporate fold information into the Model key?
#48
jyaacoub
closed
11 months ago
1
Implement dataset splitting and saving (`init_dataset.py` and `src.utils:train_val_test_split`)
#47
jyaacoub
closed
11 months ago
2
Get significance metrics for fig2 and fig3 on Davis
#46
jyaacoub
closed
10 months ago
3
Ligand dev
#45
jyaacoub
closed
11 months ago
0
Development
#44
jyaacoub
closed
11 months ago
0
Development
#43
jyaacoub
closed
11 months ago
0
Development
#42
jyaacoub
closed
11 months ago
0
Development
#41
jyaacoub
closed
11 months ago
0
Use longest sequence for PDBbind proteins
#40
jyaacoub
closed
11 months ago
0
Development
#39
jyaacoub
closed
1 year ago
0
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