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jyaacoub
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MutDTA
Improving the precision oncology pipeline by providing binding affinity purtubations predictions on a pirori identified cancer driver genes.
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`CheckpointSaver.best_model_dict` being overwritten!
#38
jyaacoub
closed
1 year ago
0
Development
#37
jyaacoub
closed
1 year ago
0
Platinum Dataset fixed
#36
jyaacoub
closed
1 year ago
0
Edge weighting
#35
jyaacoub
closed
1 year ago
0
Find Correct Kiba Structures for edge weighting
#34
jyaacoub
closed
11 months ago
3
feat: Prody Edge weighting
#33
jyaacoub
closed
1 year ago
0
fix(datasets): PLATINUM mutated seq incomplete #26
#32
jyaacoub
closed
1 year ago
0
Edge weighting work
#31
jyaacoub
closed
1 year ago
0
Refactor code to use `ProDy` parser to resolve mismatching sequences.
#30
jyaacoub
closed
1 year ago
0
DDP
#29
jyaacoub
closed
1 year ago
0
Feature extraction
#28
jyaacoub
closed
1 year ago
0
SMILE parsing issue
#27
jyaacoub
closed
1 year ago
2
incorrect sequence processing for PLATINUM database
#26
jyaacoub
closed
1 year ago
2
Weighted edges to account for protein dynamics
#25
jyaacoub
closed
10 months ago
9
Ddp train
#24
jyaacoub
closed
1 year ago
0
merge: update DDP_train
#23
jyaacoub
closed
1 year ago
0
feat(models): edge weights
#22
jyaacoub
closed
1 year ago
0
Feature extraction post ESM cleanup
#21
jyaacoub
closed
1 year ago
0
ChemGPT ligand representation
#20
jyaacoub
closed
10 months ago
1
Implement Distributed Training
#19
jyaacoub
closed
1 year ago
7
Merge main into docking
#18
jyaacoub
closed
1 year ago
0
feature_extraction
#17
jyaacoub
closed
1 year ago
0
feat(docking): flexible docking opt #5
#16
jyaacoub
closed
1 year ago
0
fix(train_test): naming overlap
#15
jyaacoub
closed
1 year ago
0
Merge into docking
#14
jyaacoub
closed
1 year ago
0
Feature extraction - ESM embeddings
#13
jyaacoub
closed
1 year ago
0
Feature extraction fixed #7
#12
jyaacoub
closed
1 year ago
0
DeepDTA+ overlap in proteins in train and test
#11
jyaacoub
closed
1 year ago
0
merge feat extraction changes
#10
jyaacoub
closed
1 year ago
0
Feature extraction - Davis kiba results
#9
jyaacoub
closed
1 year ago
0
Add esm features
#8
jyaacoub
closed
1 year ago
0
Memory issues during dataset creation
#7
jyaacoub
closed
1 year ago
2
Feature extraction initial tests
#6
jyaacoub
closed
1 year ago
0
Flexible docking baseline
#5
jyaacoub
closed
10 months ago
1
Improve PSSM feature
#4
jyaacoub
closed
1 year ago
1
Math domain error in docking prep (4bps)
#3
jyaacoub
closed
10 months ago
2
BioPython failed to get CA for residue 259 of PDB-5aa9
#2
jyaacoub
closed
1 year ago
1
`AttributeError: member babel_type not found` in preparing protein pdb
#1
jyaacoub
closed
1 year ago
3
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