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bowtie1 with versions greater than 1.2.0 are not compatible with Tophat (v2.1.1), reporting things like "./SeqAn-1.4.2/seqan/basic/basic_exception.h:236 FAILED! (Uncaught exception of type St11logic_…
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## Original issue:
[~mrms/tophat#11](https://todo.sr.ht/~mrms/tophat/11)
## Initial message:
Moved from https://todo.sr.ht/~mrms/tophat-sokol/3
### ske
dead link
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Make top hat drives and turns decelerate as it gets closer to the BW. This’ll allow more consistent stops at desired locations on the line. Would make aligns more reliable.
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Module import paths will allow to specify a path to load modules from.
It is similar to `-I` flag in C.
For example, this could be shortened:
```
import (
"window.um"; "rect.um"; "th.um";…
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Related: https://todo.sr.ht/~mrms/tophat/27
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What is the best way to reproduce the `best-fit` spectrum when `nebular_marginalization` template is turned on?
As in the fig below, the stored best-fit does not have any fitted lines, even when a …
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The [README](https://github.com/stelligent/tophat/blob/master/README.md) states:
> You already have Berkshelf and Packer installed, right? Nice.
> Make sure you have the AWS CLI installed and configu…
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This is the discussion on github
https://github.com/XCSoar/XCSoar/issues/966
XCNav updated
3 months ago
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Hello, I have the following error:
scons: *** [samples/S4/processings/circRNAs/tophat_out/accepted_hits.bam] Error 1
which appears during the tophat process.
Indeed I have the following:
[2023…
npont updated
8 months ago
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https://tophat.github.io/syrupy/
https://github.com/joseph-roitman/pytest-snapshot