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egaffo
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circompara2
Improved bioinformatic pipeline to identify and quantify circRNA expression from RNA-seq data by combining multiple circRNA detection methods
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Chromosome chr1 does not exist in the genome file circular_expression/circrna_linexp/chr_len.genome
#28
LorenzoBioinfo
opened
1 month ago
0
CLR/CLP Calculation for PE and SE Reads
#27
ChengxuanChen10
closed
2 months ago
2
CircRNA junction sequence
#26
zuiluo1116
opened
2 months ago
0
Awesome tool!
#25
merloroberto
opened
2 months ago
0
I am having trouble generating the back_spliced_junction.bed file during the CIRCexplorer2_tophat fusion step while using the circompara2 docker.
#24
bioxliuze
closed
3 months ago
0
address 0x7f6156ce83d8, cause 'invalid permissions'
#23
huiWyuan
opened
6 months ago
1
Error in strsplit(grep("Sequence length", x = fastqc_data.txt, value = T), : subscript out of bounds
#22
wer7894562
opened
7 months ago
1
-ignoreGroupsWithoutExons & singularity
#21
miguilab
opened
7 months ago
11
scons: *** [samples/S4/processings/circRNAs/tophat_out/accepted_hits.bam] Error 1
#20
npont
opened
9 months ago
1
error libncurses.so.5 related to segemehl.x
#19
npont
opened
9 months ago
1
Update mappers
#18
jaanckae
opened
10 months ago
1
collect_circrnas.py script problem？
#17
WANGchuang715
opened
11 months ago
2
Running out of RAM when using STAR to generate genome in circompara2 pipeline
#16
lovebaboon1989
closed
11 months ago
6
scons: building terminated because of errors.
#15
pecoraro90
opened
1 year ago
5
scons: Reading SConscript files ... TypeError: Tried to lookup Dir 'dbs/indexes' as a File.:
#14
pecoraro90
closed
1 year ago
0
Is circompara2 allowing for STAR-generated bam file as input?
#13
lovebaboon1989
opened
1 year ago
13
Error message in docker
#12
bnorthoff
opened
1 year ago
1
TypeError: cannot concatenate 'str' and 'int' objects:
#11
pecoraro90
opened
1 year ago
21
Calls: mean -> sapply -> lapply -> FUN -> mean -> strsplit Execution halted
#10
hafizmtalha
opened
1 year ago
9
why three different mappers ??
#9
hafizmtalha
opened
1 year ago
3
resume command ???
#8
hafizmtalha
opened
1 year ago
8
Error with setting HISAT2_EXTRA_PARAMS = "--rna-strandness RF"
#7
mianlee
opened
1 year ago
3
[samples/SRR5388395/processings/hisat2_out/SRR5388395_hisat2.bam] Explicit dependency `/home/mli/Desktop/Non_coding_RNA_Prediction/Circle_RNA/circompara2-master/genome_indexes/indexes/hisat2/GRCh38.1.ht2' not found
#6
mianlee
closed
2 years ago
0
scons: warning: Two different environments were specified for target SRR5388395_1_fastqc.html
#5
mianlee
closed
2 years ago
2
scons: *** [samples/sample_A/processings/circRNAs/dcc/CircRNACount] Error 1
#4
Kingatsu
opened
2 years ago
8
Erro: unmapped2anchors.py: error: no such option: -Q
#3
Alipe2021
closed
2 years ago
6
an error when running on Docker
#2
FitzMusk
closed
2 years ago
1
Quick installation fails
#1
sgmiriuka
closed
3 years ago
3