@egaffo Hello, I am having trouble generating the back_spliced_junction.bed file during the CIRCexplorer2_tophat fusion step while using the circompara2 docker.I have 12 samples, and 11 of them run smoothly, only the one named H7 sample fails to run.
This is a sample that runs normally.
This is the sample H7
I don’t know why only the H7 sample would produce an error.
There seems to be plenty of memory space left.
I split the H7 sample into two parts.
Interestingly, H701 can run normally while H702 encountered an error.
After converting the BAM file of H7 into fastq, the entire process can be successfully completed.But this step will lose some information.
@egaffo Hello, I am having trouble generating the back_spliced_junction.bed file during the CIRCexplorer2_tophat fusion step while using the circompara2 docker.I have 12 samples, and 11 of them run smoothly, only the one named H7 sample fails to run.
This is a sample that runs normally.
This is the sample H7
I don’t know why only the H7 sample would produce an error.
There seems to be plenty of memory space left.
I split the H7 sample into two parts.
Interestingly, H701 can run normally while H702 encountered an error.
After converting the BAM file of H7 into fastq, the entire process can be successfully completed.But this step will lose some information.
I hope to receive your help, thank you!