Improved bioinformatic pipeline to identify and quantify circRNA expression from RNA-seq data by combining multiple circRNA detection methods
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[samples/SRR5388395/processings/hisat2_out/SRR5388395_hisat2.bam] Explicit dependency `/home/mli/Desktop/Non_coding_RNA_Prediction/Circle_RNA/circompara2-master/genome_indexes/indexes/hisat2/GRCh38.1.ht2' not found #6
I was runing your pipeline using docker on centos7. I pre-built indexes using your scripts, but still get the error.
[samples/SRR5388395/processings/hisat2_out/SRR5388395_hisat2.bam] Explicit dependency `/home/mli/Desktop/Non_coding_RNA_Prediction/Circle_RNA/circompara2-master/genome_indexes/indexes/hisat2/GRCh38.1.ht2' not found
I do have the file. I am running this script : "docker run -u id -u --rm -it -v $(pwd):/data egaffo/circompara2:v0.1.2.1"
I do have meta.csv and vars.py under current directory.
Dear author:
I was runing your pipeline using docker on centos7. I pre-built indexes using your scripts, but still get the error.
[samples/SRR5388395/processings/hisat2_out/SRR5388395_hisat2.bam] Explicit dependency `/home/mli/Desktop/Non_coding_RNA_Prediction/Circle_RNA/circompara2-master/genome_indexes/indexes/hisat2/GRCh38.1.ht2' not found
I do have the file. I am running this script : "docker run -u
id -u--rm -it -v $(pwd):/data egaffo/circompara2:v0.1.2.1"I do have meta.csv and vars.py under current directory.
Thank you so much ~