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currently there are 36 genes in human annotated to this which seems high
The definitions are inconsistent in how they are phrased, and whether they talk about starts or ends:
* [] GO:0140467 ! i…
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GO constrains GO:0008023 transcription elongation factor complex to eukaryotes via its location in the nucleus
NusG in bacteria is localized to the TEFC (https://amigo.geneontology.org/amigo/ge…
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> ... transcription factor motif analysis was carried out with the FIMO package, with a p-value threshold of 0.001. A total of 614 human transcription factor binding motifs from the HOCOMOCO database …
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When I try to search for all DNA-binding transcription factors
this annotation is the first in the list
URS00001B341F_9606 | Homo sapiens (human) hsa-miR-27a-5p | | negative regulation of NF-k…
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**Hello Scenic developers,
I wanted to express my gratitude for creating such an amazing tool. I've used SCENIC to analyze single-cell data that we're interested in incorporating into our Nextflow …
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Can use 2022 jaspar binding site dataset
http://hgdownload.soe.ucsc.edu/gbdb/hg38/jaspar/
https://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg38&g=jaspar
https://jaspar.genereg.net/about/
It may b…
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This issue summarizes the steps to integrate action `chemical_gene_regulation_graph_expansion` into ARAX_infer:
- [x] Train two models (one for predicting `increase gene activity while the other fo…
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One of these seem to be wrong
because
RNA polymerase III complex
and
DNA-binding transcription factor
should not co-occur
PF3D7_0206600 | transcription factor, putative | | RNA po…
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- [x] Show the sequence logo for the selected motif.
- [ ] Make sure the images can be exported -- see #9
Options:
1. Copy all the image files from the [Aerts Lab motif collections](https://mot…
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This complex term groups DNA binding TF complexes,and general TFs
Are we happy to do that?
Definition | Parents
A protein complex, located in the nucleus, that is capable of associating with …