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@PritiShaw can you grab the MeSH terms for the PMIDs in this file?
https://reactome.org/download/current/ReactionPMIDS.txt
There are many duplicates, so make a unique list. To the same exercise…
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Brought to my attention by Colin Logie
**What is the SO term name and accession?**
intronic_splicing_silencer (SO:0002056)
exonic_splicing_silencer (SO:002058)
Both are children of silencer (SO:…
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https://doi.org/10.1101/170761
> How to extract informative features from genome sequence is a challenging issue. Gapped k-mers frequency vectors (gkm-fv) has been presented as a new type of featur…
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Hi @mariam16548
Today let's create a full-chromosome or maybe even whole genome study of a transcription factor (TF) with more length (and thus more binding complexity) that GATA1. We might exp…
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Please provide as much information as you can:
* **GO term ID and Label**
GO:0065009 "regulation of molecular function"
* **Reason for deprecation**
We have discussed that this term an…
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We need to pull a series of data to inform which genes to look for variants in.
There is a[ google doc here](https://docs.google.com/spreadsheets/d/1yX-5sfrC3vrahf4_k7-5rl4Oqzm853ollIMmUo1PTc0/edit…
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https://doi.org/10.1109/BIBM.2016.7822515 (https://arxiv.org/abs/1611.05777)
> Transcription factors (TFs) are macromolecules that bind to \textit{cis}-regulatory specific sub-regions of DNA promot…
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We are working on annotation documentation for MF-to-BP relations and would like to assess the extent to which relations, other than 'part of', have been used to link MFs to BPs in Noctua.
We would…
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This issue is relate to the CL issue #832:
https://github.com/obophenotype/cell-ontology/issues/832
initially raised by @amadeusX, and discussed by @cmungall and @addiehl
The goal here is to co…
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https://doi.org/10.1038/nature11503
>The genome-wide identification of pairs of interacting proteins is an important step in the elucidation of cell regulatory mechanisms1, 2. Much of our present kno…