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My running time for build tree seems to be alright when I run ray and triangle interaction.
| Method | Time in seconds |
|:------------|----------------:|
| brute force | 0.11231493950 …
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Hi,
It's my first time analysing metagenomics from a shotgun experiment but before to post this issue I tried some strategies to overcome the topic described below.
I would like to construct a phy…
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### What is your question?
I'm trying to conduct a Steiner Tree approximation with several terminal nodes (and subgraphs I need to analyze). However, whenever I try to iterate through, it fails at MS…
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Hi there, I'm getting an error trying to import HDBSCAN from fast_hdbscan
`from fast_hdbscan import HDBSCAN`
```
---------------------------------------------------------------------------
Typ…
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#### Description
We are currently using chewBBACA for genomic surveillance, and one of our workflows involves running the `JoinProfiles` function to add new samples to the results of historic sampl…
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#### Description
Precomputed distances are treated as "unsupported" by AgglomerativeClustering, regardless of the provenance. (e.g. sklearn.metrics.euclidean_distances)
This restriction makes it…
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Hi,
My question is not really aboat gotree, just want to know do you have any idea to deal with those negative distance branches on NJ tree?
Replace all negative value using 0, or all branches p…
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If TF is present also as target species, the tree may contain zero-length branches, that may cause issues (division-by-zero error) during the phylogenetic weighting process.
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I'm thinking it might be worthwhile to try to replace the euclidean distances used in kd-tree and ball-tree here:
https://github.com/scikit-learn/scikit-learn/blob/master/sklearn/neighbors/_dist_metr…
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### Version modpack Used
0.7.12
### Related Problem
Kaolinite is one of the few resources that are exclusive to certain climates. Other climate specific resources like Kapok trees which can be move…