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Hi. I installed RepeatMasker version 4.1.5 and completed configure with Dfam libraries. However, when I run repeatmasker with custom db from RepeatModeler, it creates "general libraries" in the Libr…
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I use spacy's transformer model for other purposes (such as NER), so re-using the same model made sense.
Looks like Spacy made some tweaks to their syntax which are breaking KeyBERT's spacy backend.
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I wanted to automate our comparison of trf logfiles with rtplan dicom files. So i thought using pymedphys would come in handy. I only walked into the following error. I'm very new with pymedphys so it…
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It seems that `simple_repeat_info
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I was wanting to update my reference TR file with different filtering settings but the TRDB website is down, is there a way to access it, or what is the best way to create a new reference file using T…
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Dear Aaron,
on Debian we enabled the regression tests of BEDTools in our continuous integration tracker (http://ci.debian.net/#package/bedtools).
Unfortunately, the regression tests for `bedtools s…
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## Steps to Reproduce
1. Close the dev server if it's running.
2. `git checkout main` and start the dev server.
3. Switch branches.
## Current Behavior
1. The Text Color icon in the toolbar…
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The IECEE TRF 60127 series has this list of identifiers:
```
IECEE TRF 60127-2-IA_I:2008
IECEE TRF 60127-2-IIA_II:2008
IECEE TRF 60127-2-IIIAIII:2008
IECEE TRF 60127-2-IVIV:2008
IECEE TRF 60…
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I have the trf logfile from Unity MRLinac, when i use pymedphys.trf to read logfile ,but crashed. The error msg is 'raise ValueError("Unexpected number of bytes within file.")'. How to solve it?
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Would the TRF file format be something in scope for python-chess? There is a package for it (https://pypi.org/project/trf/) but it would be nice to have it packaged up in a popular library.
Referen…