issues
search
Dfam-consortium
/
RepeatMasker
RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
Other
229
stars
50
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
The meaning of the divsum file obtained from calcDivergenceFromAlign.pl
#290
ltswx
opened
2 weeks ago
0
Using an additional dfam partition with `-lib`
#289
0xaf1f
opened
1 month ago
0
Linking LTRs and internal regions for ERV: Further postprocessing necessary?
#288
osthomas
opened
1 month ago
0
Wrong query sequence names in RepeatMasker output
#286
kavonrtep
opened
1 month ago
0
feature request to include repeat class and family name in the GFF output
#285
hp2048
opened
1 month ago
0
Merging Multiple .tbl Output Files from RepeatMasker Batches
#284
meduri-ruthwick
opened
1 month ago
0
Release 4.1.7-p1 with min famdb
#283
rmhubley
closed
1 month ago
0
Release 4.1.7-p1
#282
rmhubley
closed
1 month ago
0
Discrepancy in .tbl Output Format in RepeatMasker v4.1.7 Compared to .help Documentation
#281
meduri-ruthwick
closed
1 month ago
2
Release 4.1.7
#280
rmhubley
closed
1 month ago
0
release 4.1.7
#279
rmhubley
closed
1 month ago
0
Release 4.1.7
#278
rmhubley
closed
1 month ago
0
Release 4.1.7
#277
rmhubley
closed
1 month ago
0
Issue on low performance running of RepeatMasker on HPC cluster
#276
manighanipoor
opened
1 month ago
7
Illegal division by zero at ProcessRepeats line 7999.
#275
Knnnk
opened
2 months ago
9
Incomplete Output and Memory Management Issues in RepeatMasker with cgroups-limited Server
#274
kavonrtep
closed
1 month ago
2
Building general libraries in RepeatMasker
#273
ykkim0127
opened
2 months ago
4
Revert "forced int type of tax_id in FamDBLeaf.get_lineage() ..."
#272
rmhubley
closed
2 months ago
0
CrossmatchSearchEngine::parseOutput: Unable to open results file
#271
Anees-caas
closed
1 month ago
3
Could not find the "/path/to/software/rmblast-2.14.1/bin/rmblastn" directory
#270
Anees-caas
closed
2 months ago
2
forced int type of tax_id in FamDBLeaf.get_lineage() ...
#269
mbeavitt
closed
2 months ago
1
RepeatMasker 4.1.6 is not compatible with Dfam 3.8
#268
mbeavitt
closed
2 months ago
3
identify and mask repeats in a non-reference genome
#267
Anees-caas
closed
2 months ago
1
identify and mask repeats in a non-reference genome
#266
Anees-caas
closed
2 months ago
1
Trouble Running RepeatMasker with Slurm: Runtime Issue
#265
psuarezana
closed
1 month ago
1
How to correctly interpret the output of calcDivergenceFromAlign.pl?
#264
ala98412
closed
1 month ago
2
Issue with specifying "Viridiplantae" Taxon in FamDB Partitions
#263
Cauwth
closed
1 month ago
1
Exec RepMasker failed
#262
zhanghongbin01
closed
1 month ago
2
How to reduce memory cost?
#261
yhli1992
closed
1 month ago
5
Will N have an impact on blast n if RepeatMask uses hard masking and generates N from repeated sequences?
#260
helloworldABCD1234
closed
2 months ago
1
Bypass dfam
#259
tzvi909
closed
1 month ago
2
Penelope annotation
#258
anna-elisabet
closed
1 month ago
1
How to solve the ERROR: "The assumed RepeatMasker: /opt/home/sony/miniconda3/envs/MAKER2/share/RepeatMasker does not appear to be correct. E.g it does not contain a 'Libraries' or 'Matrices' subdirectory. "?
#257
nguyenvantuananh99
closed
2 months ago
1
Is there a way to make RM work on Linux with GLIBC < 2.31?
#256
rpianezza
closed
5 months ago
0
No RepeatMasker.lib.* files created with FamDB HDF5 partitions
#255
carolindahms
closed
6 months ago
2
Issue in configuration of RepeatMasker in HPC cluster
#254
manighanipoor
closed
1 month ago
1
allow RM2Bed to read and write from pipes
#253
ASLeonard
opened
7 months ago
0
Could not create repeat landscape custom Satellite -lib, Error; Not enough columns given to draw the requested chart. createRepeatLandscape.pl
#252
salmanento
closed
6 months ago
1
I cannot found repeatmasker by the time it is installed
#251
josekani17
closed
1 month ago
1
Is RepeatMasker suitable for use with transcriptomes?
#250
Tang-pro
closed
1 month ago
1
Cannot determine engine variant and version!
#249
HelloYanming
opened
8 months ago
1
80kbp strecth of genome annotated as single repeat
#248
jamesdgalbraith
opened
8 months ago
3
FATAL ERROR: RepeatMasker giving up
#247
dmacguigan
closed
1 month ago
1
Unable to find RepeatMaskerLib.h5 during installation
#246
darencard
closed
8 months ago
1
Repeat Annotations
#245
anna-elisabet
opened
9 months ago
6
Obtain an Align file
#244
awieeeee
closed
8 months ago
1
Can I run ProcessRepeats in parallel?
#243
life404
closed
1 month ago
2
RepeatModeler stuck at "Running all-by-other comparisons"
#242
Ruiqi-CUB
closed
9 months ago
3
Species "all" is not known to RepeatMasker when running -species all
#241
Ruiqi-CUB
closed
11 months ago
4
Development
#240
rmhubley
closed
11 months ago
0
Next