-
Currently, the pom.xml indicates this app runs with Java 8 (https://github.com/wikipathways/cytoscape-wikipathways-app/blob/main/pom.xml#L98) ; this should be update to 11 (when PV4 is in place @mkutm…
-
@marvinm2, @tabbassidaloii, @JervenBolleman, please check the draft write up of the WikiPathways VoID statistics SWAT4HCLS biohackathon session: https://github.com/biohackathon-swat4hcls/2024-hack4-ha…
egonw updated
6 months ago
-
see https://github.com/ejp-rd-vp/vp-portal-issues/issues/35
-
Discuss with @DeniseSl22
-
test_adata=ad[ad.obs['celltype'].isin(['T-GO01','T-GO05'])]
dds_meta=ov.bulk.pyDEG(test_adata.to_df().T)
dds_meta.drop_duplicates_index()
print('... drop_duplicates_index success')
treatment_gro…
-
WikiPathways has URIs in hasPart that are of the "type" protein, e.g. http://identifiers.org/reactome/REACT_26910 ( from mapURL http://www.reactome.org/cgi-bin/eventbrowser_st_id?FROM_REACTOME=1&ST_I…
-
-
-
In the linkset [ConceptWiki-WikiPathways](http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/wikipathways.ttl) we find two kind of links, unversioned and versioned:
``` turtle
skos:exactMatch
…
stain updated
9 years ago
-
Some prot are object but also bl:part_of interactions in wikipathways
http://graphdb.dumontierlab.com/resource?uri=http:%2F%2Frdf.wikipathways.org%2FPathway%2FWP2763_r101553%2FWP%2FInteraction%2Fdbcb…