wikipathways cytoscape-wikipathways-app issues

wikipathways / cytoscape-wikipathways-app

WikiPathways app for Cytoscape to open and access pathways from WikiPathways

Apache License 2.0

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issues

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Create LICENSE

#134 mkutmon closed 1 year ago
0
Where edges are connected to edges in WikiPathways are not imported correctly into Cytoscape

#133 kozo2 opened 1 year ago
0
Add "multi-omics" column

#132 DeniseSl22 opened 2 years ago
0
3.3.10

#131 yihangx closed 2 years ago
0
Metabolite mappings

#130 DeniseSl22 closed 2 years ago
0
Search should give closest match

#129 DeniseSl22 opened 2 years ago
0
Java version 8 to 11?

#128 DeniseSl22 opened 2 years ago
0
3.3.10

#127 DeniseSl22 closed 2 years ago
0
3.3.10

#126 DeniseSl22 closed 2 years ago
1
jdom issues for 3.3.10

#125 DeniseSl22 closed 2 years ago
4
Added new PV+BridgeDb versions in line with pom.xml

#124 DeniseSl22 closed 2 years ago
1
Add standardizes metabolite IDs in one column to resolve data mapping issues

#123 DeniseSl22 closed 2 years ago
2
update icon in network search bar

#122 AlexanderPico closed 2 years ago
0
Style is corrupted in 3.3.8

#121 AlexanderPico closed 2 years ago
1
Importing a pathway as a network: missing in 3.3.8

#120 dygdedesener closed 2 years ago
3
Ensembl mapping column not added in 3.3.8

#119 AlexanderPico closed 2 years ago
2
3.3.8: Network view is frozen after pathway import

#118 khanspers closed 2 years ago
13
Features to keep in unreleased work

#117 ariutta closed 2 years ago
1
Bump httpclient from 4.3.6 to 4.5.13

#116 dependabot[bot] closed 2 years ago
0
Centripetal Catmull-Rom spline for curve edges?

#115 ariutta opened 3 years ago
9
Fix SIF export to make it possible to export from a pathway imported as network

#114 khanspers opened 3 years ago
0
Bug: Importing local gpml file doesn't work unless pathway is first imported from WikiPathways

#113 khanspers opened 3 years ago
4
Allow PWs to be linked to base-64 encoded image

#112 DeniseSl22 opened 4 years ago
4
Add Rhea column for edges

#111 DeniseSl22 opened 4 years ago
1
Add ChEBI column to all imported pathways

#110 AlexanderPico closed 4 years ago
2
Add new WPs logo in app

#109 DeniseSl22 closed 4 years ago
0
Ensembl mapping during import not working completely

#108 khanspers closed 4 years ago
2
Urgent: Edge Table names are missing

#107 AlexanderPico closed 2 years ago
5
Problem importing pathway as pathway in cytoscape 3.7.1

#106 IreneHemel opened 5 years ago
13
Brace Shape should be open

#105 ariutta closed 5 years ago
1
Map Metabolite annotations to Wikidata

#104 ariutta closed 5 years ago
3
Some pathways not loading with 3.3.76

#103 ariutta closed 5 years ago
4
Major Issue: Export to CX bug

#102 ariutta closed 2 years ago
9
Metadata into Network Table

#101 ariutta closed 5 years ago
3
GPML Labels should be CyAnnotations

#100 ariutta closed 5 years ago
1
Errors with Cytosacpe 3.8.0-SNAPSHOT

#99 AlexanderPico closed 5 years ago
5
Need command for import-from-file

#98 AlexanderPico closed 5 years ago
3
group labels not shown by default

#97 mkutmon opened 5 years ago
2
Literature Citations

#96 AlexanderPico closed 5 years ago
1
Fake ports in Cytoscape

#95 AlexanderPico opened 5 years ago
0
Double membrane shapes

#94 ariutta opened 5 years ago
1
Remove KEGG

#93 AlexanderPico closed 5 years ago
1
HTTPS

#92 AlexanderPico closed 5 years ago
0
Node and Edge States, Comments and Literature Refs Should be Imported in New Columns

#91 AlexanderPico opened 5 years ago
2
Phosphorylation states lost in import-as-network

#90 AdamStuart closed 5 years ago
0
WP255 missing Ensembl mapped column

#89 AlexanderPico closed 5 years ago
4
WP255 gets stuck before loading is complete

#88 AlexanderPico closed 5 years ago
0
Shape annotations should be on background canvas

#87 AlexanderPico closed 5 years ago
1
style properties missing from import-as-network

#86 AlexanderPico closed 5 years ago
1
Missing ensembl mapping with import-as-network

#85 AlexanderPico closed 5 years ago
1