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I would like to be able to use zarr + virtualizarr + icechunk with variable-length chunks - see
https://github.com/zarr-developers/zarr-specs/issues/138.
I'm thinking about what changes in the st…
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Opening up a tracking issue for Zarr V2 and Zarr V3/Icechunk compatible readers. It might be useful to open up multiple existing Zarr stores and virtualizarr'ize into a single Zarr. I think @maxrjones…
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### What happened?
`NWBZarrIO` is wrapped in a giant try/except that masks exceptions: https://github.com/hdmf-dev/hdmf-zarr/blob/dev/src/hdmf_zarr/nwb.py#L12
pynwb 2.8.2 is not compatible with th…
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At this time, installation of bioio-ome-zarr plugin is required to read and process zarr files.
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Hi icechunk team,
When attempting to read a large Zarr array using IceChunk, I encounter an intermittent error: `ValueError: store error: unsuccessful repository operation: error contacting storage…
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With @zonia3000, we prepared a testing environment for HTTP data access that requires BasicAuth (i.e. username and password) authentication.
1. Prepare the following `Dockerfile`:
```
FROM ghcr.i…
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I'm trying vcztools on a zarr store that was not created with bio2zarr. This zarr includes an additional dimension 'nucleotides' which I would like to exclude from the output VCF but would rather nod …
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I'm at the [pangeo showcase talk](https://discourse.pangeo.io/t/pangeo-showcase-hycom-oceantrack-from-17-518-netcdf-files-to-an-analysis-ready-cloud-optimized-dataset-in-the-cloud/4597). Shane Elipot …
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**Describe the bug**
In the `ome-zarr` case, `RasterJsonLoader.js` handles a `coordinateTransformations` metadata attribute, in which we can scale and move the image. However it seems to be impossibl…
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### Zarr version
3.0.0a5
### Numcodecs version
0.13.1
### Python Version
3.10.12
### Operating System
Linux
### Installation
pip install
### Description
Reading a v2 array written with Zarr…