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AllenCell
/
EMT_image_analysis
Repository for EMT image analysis code
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Quilt links are not downloadable via curl
#28
pgarrison
opened
2 days ago
0
Colony mask training/inference instructions
#27
mfs4rd
opened
3 days ago
1
Installation instruction `source venv/bin/activate` is not Windows compatible
#26
pgarrison
opened
4 days ago
0
Colony mask inference `pip install .` may fail
#25
pgarrison
opened
6 days ago
1
Colony mask inference cyto-dl configs use non-portable paths
#24
pgarrison
opened
6 days ago
0
Bugfix for mesh generation
#23
mfs4rd
closed
4 days ago
2
Colony mask dependencies and cyto-dl configs
#22
pgarrison
closed
2 weeks ago
0
Wrapper function to download image data to a local directory
#21
mfs4rd
closed
4 days ago
2
s3 access fix
#20
mfs4rd
opened
1 month ago
4
All cells mask structure modification
#19
smishra3
opened
1 month ago
1
use colum names from data release
#18
mfs4rd
closed
1 month ago
0
compatibility changes to mesh generation script
#17
mfs4rd
closed
2 months ago
1
All cells mask train and inference yaml files
#16
smishra3
closed
2 months ago
0
Matheus review
#15
vianamp
closed
2 months ago
0
bioio usage for mesh generation
#14
mfs4rd
closed
2 months ago
1
README file and CLI compatibility for mesh generation code
#13
mfs4rd
closed
2 months ago
0
more docs
#12
gouthamr321
closed
2 months ago
0
Bm workflow
#11
smishra3
closed
2 months ago
0
Mesh generation
#10
mfs4rd
closed
2 months ago
0
Add functions for loading the dataset (FMS query)
#9
smishra3
closed
2 months ago
0
Add code for colony mask GT generation
#8
smishra3
closed
2 months ago
0
Add ZO1 segmentation
#7
smishra3
closed
2 months ago
0
Add nuclei classification (inside outside)
#6
smishra3
closed
2 months ago
0
Add mesh generation
#5
smishra3
closed
2 months ago
0
Add 3D nuclei segmentation
#4
smishra3
closed
2 months ago
0
Add feature extraction code for colorizer
#3
smishra3
closed
2 months ago
0
Add in focus nuclei segmentation
#2
smishra3
closed
2 months ago
0
Add code for colony mask training
#1
smishra3
closed
2 months ago
0