This repository contains code for reproducing the image analysis used in our manuscript [1]. This repository uses public available data hosted on AWS. The segmentations and 3D meshes generated by this code is further used by EMT_data_analysis to make the plots shwon in the manuscript.
If you have questions about this code, please reach out to us at cells@alleninstitute.org.
All code in this repository is provided to you under the Allen Institute Software License.