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@noamross you raise an excellent point here that despite a DOI being the *canonical* way to refer to / access a dataset, there really is no well-defined / machine-readable way to determine a download …
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This is an extension to John Chilton's https://github.com/galaxyproject/galaxy/issues/6202 so we can flesh out how the archive upload/extract feature will behave.
## August 2023 update
After dis…
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As a **software developer**, I want **to provide a signature along with RO-Crates my software exports** so that **users can verify that the RO-Crate is from my software and hasn't been altered by a th…
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Based on the applicable Source to Target file mapping configuration specified [here](https://app.zenhub.com/workspaces/presqt-5c2e507cef323029ba824f0b/issues/ndlib/presqt/82), the system prepares the …
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From what I can tell is if RTS is enabled and unable to connect to duracloud it breaks authentication such as Shibboleth
Not sure if there is a way to gracefully fail instead of throwing exceptions…
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The PresQT system initiates a transfer API request to the target system utilizing the authentication credentials and/or session established when the user previously logged into the target system
1. Th…
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Reproducibility and provenance are increasingly important.
Makefiles and Makefile-like solutions such as biomake help with reproducibility; if the recipe and input files are provided in a github re…
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Noticed in the pdam cunnings MFD file, sometimes ref sub-major-tags can be pointing to databases. (e.g. ncbi genome resources, github repositories). This doesn't work with the concept of a fetch.txt f…
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This epic covers the data and paper publication.
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The classes in `reader` take a path to a file on disk, read that file and then parse the contents. For example:
```java
public final class KeyValueReader {
/**
* Generic method to read key …