evoldoers biomake issues

evoldoers / biomake

GNU-Make-like utility for managing builds and complex workflows

BSD 3-Clause "New" or "Revised" License

100 stars 9 forks source link

issues

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Incorrect expansion of $(foreach...) variable inside nested $(addsuffix...)

#87 ihh closed 7 months ago
0
Recent SWI Prolog breaks DCG test?

#86 ihh opened 9 months ago
0
Create CITATION.cff

#85 cmungall closed 2 years ago
0
Add Docker instructions

#84 cmungall opened 3 years ago
0
Meta issue: how much hope should I place in biomake, realistically?

#83 rulatir closed 9 months ago
3
Cannot specify multiple targets using a variable

#82 rulatir opened 3 years ago
0
Silently unsupported GNU Make feature: Rules with Grouped Targets

#81 rulatir opened 3 years ago
0
If a deep dependency fails with "no way to make", only a direct dependency of the main goal is mentioned

#80 rulatir opened 4 years ago
0
Target-specific variables unsupported or broken

#79 rulatir opened 4 years ago
3
Multiple outputs - correct pattern

#78 samwalrus opened 4 years ago
1
Build failure should result in the deletion of unbuilt targets

#77 ihh opened 4 years ago
0
Ensure that database value of md5 is retracted when re-calculating hash.

#76 cmungall opened 4 years ago
6
Dependency paths longer than 2 nodes unsupported?

#75 rulatir closed 4 years ago
3
SWI-Prolog 8 Compatibility

#74 samwalrus closed 4 years ago
0
Problem with swi-prolog 8?

#73 samwalrus closed 4 years ago
3
Question about job submissions on PBS using biomake

#72 samwalrus closed 4 years ago
2
Refactor the README into readthedocs

#71 cmungall opened 5 years ago
0
Consider eliminating the -l option

#70 ihh closed 5 years ago
1
Mirror S3 bucket using aws s3 sync

#69 ihh closed 5 years ago
0
Biomake macro for MD5 hash of a file

#68 ihh opened 5 years ago
0
More Prolog recipes for extending rules

#67 ihh opened 5 years ago
0
Regex dependency

#66 ihh closed 5 years ago
6
Add biomake to bioconda

#65 cmungall opened 5 years ago
0
SnakeMake parser

#64 ihh closed 5 years ago
6
Welcome message should draw version number from pack.pl

#63 cmungall opened 6 years ago
0
Use If-Modified-Since & Content-MD5 HTTP headers to examine remote dependencies

#62 ihh closed 6 years ago
1
Tag a stable release

#61 sjackman closed 5 years ago
4
[WIP] Dockerizing biomake

#60 cmungall closed 3 years ago
2
Retain the job number

#59 sjackman opened 6 years ago
2
SLURM: Option to join stdout and stderr

#58 sjackman opened 6 years ago
3
Pattern rules with multiple targets

#57 sjackman opened 6 years ago
0
Implement multiple rules per target

#56 sjackman opened 6 years ago
0
Implement static pattern rules

#55 sjackman opened 6 years ago
0
Observe the SHELL environment variable

#54 sjackman opened 6 years ago
4
biomake -Q slurm prints an error when the subdirectory does not exist

#53 sjackman opened 6 years ago
14
export requires a blank line after

#52 sjackman closed 6 years ago
4
Prefer more specific rules over more general ones

#51 sjackman opened 6 years ago
0
Set environment variables with export foo=bar [feature request]

#50 sjackman closed 6 years ago
8
SLURM with multiple dependencies

#49 sjackman closed 6 years ago
4
prolog/biomake/cli.pl: Bump version to 0.1.3

#48 sjackman closed 6 years ago
2
Bio-Linux compatibility

#47 tony-travis closed 6 years ago
2
Support for .DELETE_ON_ERROR ?

#46 tseemann closed 6 years ago
5
Use built-in hash predicates of library(crypto) for portability

#45 triska opened 6 years ago
1
Backslashes in dependencies make biomake sad

#44 sjackman closed 6 years ago
13
biomake does not actually abort on ^C.

#43 dondelelcaro closed 6 years ago
3
If errors are ignored, report

#42 cmungall closed 7 years ago
0
Implement order-only prerequisites

#41 ihh opened 7 years ago
0
Cyclic dependency makes biomake sad

#40 ihh opened 7 years ago
0
Implement MAKECMDGOALS variable

#39 ihh closed 7 years ago
0
evaluating arguments for $(bagof T,G)

#38 cmungall closed 7 years ago
1