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given design matrix info, script to generate the setlabels csv files
input from bids format or fsl 3 cols?
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## Introduction
[BIDS or Brain Imaging Data Structure](https://bids.neuroimaging.io/) can be decribed as a simple and intuitive way to organize and describe your neuroimaging and behavioral data.
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All features (pipeline steps) can and should be worked on independently and in parallel. Any steps for which implementation relied on a prior step first being completed have been merged into one singl…
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# Concept Annotations via NIDM-Terms Fosters Improved Search of OpenNeuro Datasets
***By David Keator, University of California, Irvine***
- Theme: Open Data 2.0
- Format: Lightning talk
## Ab…
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Brain cell finder is a tool for fully automated localization of soma in 3D mouse brain images acquired by confocal light sheet microscopy.
https://github.com/paolo-f/bcfind
Started here:
https:…
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Following the example https://github.com/mne-tools/mne-bids/blob/master/examples/convert_ieeg_to_bids.py I only see a way to write BIDS iEEG using the .FIF format.
This comes due to the problem th…
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### Related problem
The filenames are [currently](https://github.com/FCP-INDI/C-PAC_templates/tree/8d4ceb4cbe7024686425cb700acdce369ffb6e32/atlases/label) not following any consistent pattern (the ma…
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Hello, I have been trying to pre process my data that are stored in BIDS format. These are the settings I am using:
![Screenshot 2024-05-13 172704](https://github.com/methlabUZH/automagic/assets/1694…
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Expansion of the logic in #53 to cover more than the Issue title.
There are likely many situations where one wishes to be able to provide instruction on how the person responsible for collecting th…
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Write Python code that runs the mrtrix CLI to produce DTI outputs on the preprocessed data (which the current code puts in BIDS format) and then organizes it into a BEP16-compliant derivative dataset.…