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If I want to take two PDB files (ex: protein and ligand) and make a prediction about their binding affinity using a model I have already created, how can I best go about this?
Do I take in the SMIL…
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The annotation standard for proteomics experiments are not clear enough for curators.
Problems that are causing issues:
1. Differentiating between a purification and an enrichment
2. What to …
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Implement a (simplified) version of the voxel feature extraction
Ref: https://github.com/Acellera/htmd/blob/master/htmd/molecule/voxeldescriptors.py
> Both protein and ligand are featurized via …
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The first dataset that has been collected now lies in the folder:
**data/dataset1**
The first dataset was collected using the code that is in:
**dataset1.R**
The first dataset collected was fi…
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* pvactools version:1.1.0
* Python version:2.7
* Operating System:linux
**Describe the bug**
Traceback (most recent call last):
File "/opt/conda/bin/pvacseq", line 11, in
sys.exit(main(…
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Hi,
I used mouse samples. but pvacseq stoped working.
I have two samples. two samples had a same problem. like that,
, which stores 640 observations of 11 features. The data forms a clearly tree-…