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If you hover over a numerical metadata field, e.g. Expressed Genes, you see the graph showing percentages, but the labels for the different bars is just 'undefined'.
![cellbrowserNumericalUndefined…
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Hi Max,
We'd like for CellBrowser to pick up ALL of the cell-wise metadata from Scanpy annData objects. But cbScanpyImport() seems to ignore anything it's not expecting. So e.g. we can color by Lou…
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For some reason, I can't search by gene symbol in my cell browser: https://genome-test.gi.ucsc.edu/~mspeir/cb_pancreas_csv_v4/?ds=HCA_Pancreas_Aging
Data for this browser is in: /hive/users/mspeir/…
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When you run 'cbTool metaCat' it replaces any spaces in the original field names with underscores, '_'. For example, 'Louvain Cluster' would become 'Louvain_Cluster' in the output file.
Now, if you…
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If you combine both the heatmap and split screen features, the cell browser image squishes up into the left half of the screen:
![cellbrowserHeatmapSplitscreen](https://user-images.githubuserconten…
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I can see when I run cbScanpy on a loom file that it picks out that there is metadata (note the '... storing' lines):
```
Computing percentage of mitochondrial genes
... storing 'construction_appro…
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@maximilianh When I open the 'Find Cells' pop-up from the 'Edit' drop-down, I can't seem to actually find any cells after selecting a field and entering a filter value. If I hit 'enter' on my keyboard…
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Hi, thank you for building and releasing this really beautiful browser. I am attempting to build a cell browser served by Apache on a machine running CentOS 7.5. Running a demo browser using your exam…
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This is version 0.4.23
`cbScanpy -e -o ipf3_files -n ipf3`
gets
```
Performing UMAP
Performing PHATE
Performing PAGA+ForceAtlas2
Traceback (most recent call last):
File "/home/cellranger/a…
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Here https://github.com/maximilianh/cellBrowser/blob/914bbf5c300203b90072ae3e8c0a0e227708646d/src/cbImportSeurat#L3 R fails silently, without producing an error code, which is normally used in workflo…
pcm32 updated
5 years ago