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I am preparing the files according to the example input folder:
https://github.com/medema-group/bigslice/blob/master/misc/input_folder_template/taxonomy/dataset_1_taxonomy.tsv
I used GTDB-tk 1.5 …
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**Is your feature request related to a problem? Please describe.**
When configuring a xcube server for specific datasets, I can specify e.g. an augmentation added to the dataset or using a specific s…
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Hello
I am using the abundance_lines function, and I was wondering if there any way to denote specific taxa as specific colors without using a palate or something?
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The [lists of indicator values](https://github.com/NIVANorge/begroing-index/tree/main/indicator_values) are not complete today.
![Screenshot from 2022-03-22 15-20-45](https://user-images.githubuser…
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Please fill out the template below and click "submit" to request a trait dataset to the Open Traits Network. Please allow for some time for @open-traits-network/editors to review your submission.
`…
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Hello,
I am analysing 16S rRNA amplicon sequencing data and I would like to assign better the OTU classified as cyanobacteria I find my samples. I think cyadrasil does a better job than other curre…
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Hi,
I was doing what I thought was simple but when I subset taxa for Cyanobacteria or Mito, using the ! (not) the operation seems to filter the object improperly.
This was classified using SILV…
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https://github.com/BigelowLab/edna-dada2/blob/main/3step/asv_18S_postprocess.R#L148
What are we doing here? And why doesn't it go into ASV_taxa.csv?
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Hi, I am trying to do multiple regression to determine what impacts proportion of cyanobacteria in each sample. How can I pull out the proportion of cyanobacteria of each sample in my phyloseq object…
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Given the filtering-step as outlined [here](https://gregcaporaso.github.io/2022.1-faes-tutorial/tutorial-downstream/020-taxonomy.html#more-filtering), I'd recommend using the following command, or a v…