medema-group bigslice issues

medema-group / bigslice

A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data

GNU Affero General Public License v3.0

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issues

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Update __init__.py

#85 dtdoering opened 1 week ago
0
Update fetch_taxonomy_from_api.py for updated GTDB API

#84 dtdoering opened 3 weeks ago
0
Are antismash versions important?

#83 ayaloglu opened 4 months ago
0
ValueError: Could not determine alphabet of file

#82 yuezhiTang opened 5 months ago
2
“sqlite3.OperationalError: unable to open database file” error when using "--export-tsv"

#81 BioGavin opened 5 months ago
1
Problems encountered while running bigslice

#80 yuezhiTang closed 5 months ago
0
Add Option to Disable L2-Normalization for Compatibility with Older BiG-SLICE Results

#79 matinnuhamunada opened 8 months ago
0
- __main__ - ERROR - An error occurred while downloading bigslice_models.tar.gz

#78 liuliuliu0304 closed 7 months ago
4
antismash version7 output not recognized by bigslice

#77 HongjaePark86 closed 7 months ago
2
BGCs are being clustered into one GCF, and the distance values appear identical.

#76 ChrisC610 opened 10 months ago
0
antiSMASH output .gbk files not recognized by BigSlice

#75 ERBringHorvath closed 7 months ago
1
"is not a recognized antiSMASH clustergbk"

#74 MingyueCheng closed 1 year ago
0
Remove the BGC id's which does not have any features extracted before performing the final clustering

#73 AmayAgrawal opened 1 year ago
0
How do I extract similar BGC distance values from the interactive output

#72 boykawang opened 1 year ago
15
Fetching the download_bigslice_hmmdb

#71 MenusGarg closed 1 year ago
0
datasets.tsv

#70 wang123yue opened 1 year ago
0
Improved code

#69 louwersj closed 1 year ago
0
KeyError while running bigslice

#68 AmayAgrawal opened 1 year ago
4
"Can't find a matching hmm library in the database!" when running --query mode from antiSMASH v6 results

#67 jolespin opened 1 year ago
7
[Feature Request] Remove the requirement for the output directory to have a subdirectory called `result` (even in a new run)

#66 jolespin opened 1 year ago
1
Installation check

#65 yschencau opened 1 year ago
6
Update generate_antismash_gbk.py

#64 FriederikeBiermann closed 1 year ago
0
Running on a job queue / non-interactive environment

#63 cmfield opened 1 year ago
2
Update .gitignore, changed Python logging, added exception handling.

#62 louwersj closed 1 year ago
5
Issue Querying antiSMASH BGCs

#61 planctoqueen opened 1 year ago
4
CVE-2007-4559 Patch

#60 TrellixVulnTeam closed 1 year ago
0
Parsing and Inserting gbks from MIBiG

#59 nicholascdove opened 1 year ago
5
Incorrect version

#58 dalwindercheema opened 1 year ago
0
extract_bgcs_metadata.py AttributeError

#57 neptuneyt opened 1 year ago
11
Cosine distance among BGCs

#56 neptuneyt opened 1 year ago
0
Changing the default temporary directory location

#55 matinnuhamunada opened 2 years ago
0
where the Can't find HMM model libraries can be put ?

#54 Caiyulu-818 closed 1 year ago
1
must using antismash parameter --pfam2go?

#53 Caiyulu-818 opened 2 years ago
0
Suggestion: remove interactive prompts

#52 danudwary opened 2 years ago
0
os.sched_getaffinity not available on MacOS

#51 danudwary opened 2 years ago
0
bigslice output

#50 INFINITY1993 opened 2 years ago
2
Error in generation of antismash regions using "generate_antismash_gbk.py"

#49 mfrand-7 opened 2 years ago
0
BiG-SLiCE output visualization issues: jsonify'd DataTables & antiSMASH6

#48 ialas opened 2 years ago
2
Trouble querying antiSMASH BGCs

#47 pjtorres closed 2 years ago
3
Broken link for jupyter notebook scripts?

#46 matinnuhamunada opened 2 years ago
1
Unpack error

#45 kpenn88 closed 2 years ago
5
Possible to generate a data frame output from Interactive output

#44 ashwinssudarshan closed 2 years ago
1
question about input folder (clustering mode)

#43 Valentin-Bio-zz closed 2 years ago
1
can't use pip install ./bigslice/ commend

#42 byeollee opened 3 years ago
2
[Question] Pre-processed antiSMASH results from BiG-SLiCE paper

#41 tamuanand closed 2 years ago
1
[Question]: isolate_fungal dataset in pre-processed dataset

#40 tamuanand closed 2 years ago
1
Cases when the taxonomy information of the interested species is only partially available

#39 jinnjy closed 2 years ago
1
using with gecco

#38 smb20200615 closed 3 years ago
0
raise FileNotFoundError() while pharsing hmmtext

#37 ZehanDai opened 3 years ago
2
bug: parsed folder paths lose its first letter

#36 satriaphd closed 3 years ago
0