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Hi, Heng,
I use your prebuilt graph GRCh38-20-0.10b.gfa.gz(download from ftp://ftp.dfci.harvard.edu/pub/hli/minigraph) to call SV.
My command is as the following "minigraph -xasm --call GRCh38-20-…
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Issues with cBioPortal files for PANC files after latest derived variable code update and mapping update reported by cBioPortal:
1. data_clinical_patient.txt
a. ca_resect_status variable missing…
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I created my own `pyproject.toml` rules file for use with `isort`, and it's located in `.github/linters/pyproject.toml` as suggested.
When I set up my Action, it should use the config file located …
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````
(MAESTRO) [zhou@localhost ~]$ conda install maestro=1.5.1 -c liulab-dfci
Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retryi…
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BPO | [21638](https://bugs.python.org/issue21638)
--- | :---
Nosy | @pitrou, @vstinner
*Note: these values reflect the state of the issue at the time it was migrated and might not reflect the current…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/kstreet13/VDJdive
Confirm the following by editin…
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Hello:
When I run program chilin, do I need to run program trimmomatic first?
Thank you
Li
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I'm taking my first dive into single-celled human data with BCR/TCR sequence construction. Is there a database that you would recommend to start out with? You mentioned IMGT but there are [several ver…
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I installed cnvkit via conda on linux, as recommended. But envoking cnvkit.py (e.g. `cnvkit.py scatter -h` or just `cnvkit.py`) gave the following error.
`ImportError: libcrypto.so.1.0.0: cannot open…
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Reported by Danny
"Khalil, Danny N./Medicine"
It looks like there is an issue with the RNA-Seq data: The underlying expression matrix only includes genes starting with the letters A-S (SLC26A5 …