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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/aya49/flowGraph
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aya49 updated
3 years ago
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Hello,
I would like to create a 100% stacked bar plot for taxa collapsed to the genus level. I did it by using R to calculate the relative abundance at genus level, then picking up the top 20 taxa an…
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Would be great if we can annotate this list:
```
PXD004732 -- ProteomeTools -- 104608
PXD000561 -- A draft map of the human proteome -- 97948
PXD002815 -- A human interactome in three quantitat…
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Greetings
Now that MSSim is running, I am wondering how can I simulate differentially expressed proteins. I haven't found any option for that on the tool. However, one of the parameters in the ini …
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Hi there,
I am currently dealing with a dataset of 16S OTUs from sediment of two Antarctic cruises. I notice that in some of the phyloseq tutorials, the following is used:
```
dds1 = phyloseq_to_des…
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Hi all,
thanks for corncob. I've enjoyed using this package so far.
I have a conceptual question - is this approach applicable to longitudinal data? If, for example, I wanted to look for differ…
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Hi,
Thank you for the great package.
What does it mean when all of the tests have a score = 0. That there are essentially no features that differ in abundance, so the function cannot calculate …
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Hi Aaron,
cool to see you're involved in this project!
I want to create reference data to use with SingleR, is it ok to generate pseudobulks from an annotated SC dataset? And would I need to TPM the…
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Hey!
I am following the qurro tutorial as a standalone tool. I generated the ordination.txt file by deicode. But when I run the qurro command, the output index.html doesn't load anything.
I cannot…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/williazo/microbiomeDASim
Confirm the following by…