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SingleR-inc
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SingleR
Clone of the Bioconductor repository for the SingleR package.
https://bioconductor.org/packages/devel/bioc/html/SingleR.html
GNU General Public License v3.0
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Updates for the latest version of the tatami library.
#271
LTLA
closed
1 month ago
1
SingleR: download Error
#270
isaiao01
closed
4 weeks ago
5
Error in is.null(rownames(x)) && nrow(x) : invalid 'y' type in 'x && y' only on ImmGen data.
#269
aleferna
opened
1 month ago
1
Error: useNames = NA is defunct. Instead, specify either useNames = TRUE or useNames = FALSE. Traceback:
#268
ArzooShamoon
opened
1 month ago
2
Can we use Bulk Time-series datasets to annotate other bulk RNA samples
#267
Rohit-Satyam
closed
1 month ago
1
SingleR: GetAssayData doesn't work for multiple layers in v5 assay
#266
Eos-halo
closed
1 month ago
1
SingleR - "sc_data" is missing
#265
nitinmahajan20
closed
1 month ago
1
singleR runs forever
#264
ryanhchung
closed
4 months ago
1
"object of type 'S4' is not subsettable" error
#263
ycl6
closed
4 months ago
2
Pruned labels doubts
#262
MartaBenegas
closed
4 months ago
6
Installation of SingleR in R/4.2.2 using BiocManager v3.16 fails
#260
star0044
opened
5 months ago
1
Fix color control of plotScoreHeatmap when 'normalize=TRUE'
#259
dtm2451
closed
5 months ago
3
Error： no common genes between 'test' and 'ref'
#258
MOKA1066
closed
5 months ago
1
Annotation of integrated counts
#257
LeaLe88
closed
5 months ago
2
Error: useNames = NA is defunct. Instead, specify either useNames = TRUE or useNames = FALSE.
#256
LeaLe88
closed
6 months ago
5
Error: useNames = NA is defunct. Instead, specify either useNames = TRUE or useNames = FALSE.
#255
LeaLe88
closed
6 months ago
0
JoinLayers function for Seurat Object for annotation with SingleR
#254
LeaLe88
closed
6 months ago
4
Cell Type abbreviation of ImmGenData
#253
Jammm11
closed
6 months ago
3
error when running SingleR
#252
joe-jhou2
closed
6 months ago
4
SingleR book site not found
#251
Lucyyang1991
opened
7 months ago
2
Dealing with underrepresented cell types across references
#250
samgest
closed
7 months ago
1
fatal error: Rtatami.h: No such file or directory
#249
ramadatta
closed
6 months ago
2
SingleR: did not converge in 10 iterations
#248
abulislam
opened
8 months ago
0
Example of using harmonised labels for `de.method="wilcox"` instead of classic marker detection
#247
denvercal1234GitHub
opened
9 months ago
1
Is it appropriate to use RNAseq data to annotate flow cytometry data via SingleR?
#246
denvercal1234GitHub
opened
9 months ago
4
could not find function "CreateSinglerObject"
#245
coconutll
closed
10 months ago
1
BiocParallel errors：could not find function ".OLD_read_block"
#244
alopehba
closed
10 months ago
3
Use log-transformed P-values in `trainSingleR()`
#243
PeteHaitch
closed
1 year ago
3
Should `trainSingleR()` make use of log-transformed P-values?
#241
PeteHaitch
closed
1 year ago
3
Transition to the new beachmat initialization strategy.
#240
LTLA
closed
1 year ago
0
runtime for SingleR
#239
gebdu
closed
1 year ago
1
Library loading issue
#238
rytpark
opened
1 year ago
1
Infinite execution when multithreading is enabled
#237
ATpoint
closed
1 year ago
4
Vignette Doesn't Explore Between-Atlas Labelling Stability
#236
DarioS
closed
1 year ago
2
Create plotScoreDistribution.R
#235
enBiter
closed
8 months ago
0
Viewing the classification genes
#234
antoine4ucsd
closed
1 year ago
7
BiocParallel errors
#233
antoine4ucsd
closed
1 year ago
12
`error: call of overloaded 'XPtr(Rcpp::Vector<19>::Proxy)' is ambiguous` during installation.
#232
jxshi
closed
1 year ago
1
Question on SingleR method correlation by needing reference dataset stratification
#231
mauritsunkel
closed
1 year ago
2
Parallel computing fails on HPC cluster
#230
royfrancis
closed
1 year ago
1
Installation fails: fatal error: raticate/raticate.hpp: No such file or directory
#229
gorgitko
closed
1 year ago
2
raw data or logNormalized data?
#228
nickhir
closed
1 year ago
2
Parallelize `getClassicMarkers` across `indices` for high numbers of pairwise combinations
#227
LTLA
closed
2 years ago
0
SingleR and FindAllMarkers with Seurat Object using SCTransform v2
#225
Chris-lang478
closed
1 year ago
1
Switch to the singlepp C++ libraries for the underlying calculations.
#224
LTLA
closed
2 years ago
1
Error in is.null(rownames(x)) && nrow(x) : invalid 'y' type in 'x && y'
#223
msteph11
closed
1 year ago
2
Can preconstructed indices be trained for a reference dataset and then subsetting for common genes before testing?
#222
mauritsunkel
closed
2 years ago
2
Errors in creating pred.hesc
#220
rustylakeparadox
closed
1 year ago
3
SingleR issue
#219
sivaraja23
closed
1 year ago
3
SingleR Issue.
#218
sivaraja23
closed
2 years ago
4
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