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SingleR-inc
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SingleR
Clone of the Bioconductor repository for the SingleR package.
https://bioconductor.org/packages/devel/bioc/html/SingleR.html
GNU General Public License v3.0
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Switch to the singlepp C++ libraries for the underlying calculations.
#224
LTLA
closed
2 years ago
1
Error in is.null(rownames(x)) && nrow(x) : invalid 'y' type in 'x && y'
#223
msteph11
closed
1 year ago
2
Can preconstructed indices be trained for a reference dataset and then subsetting for common genes before testing?
#222
mauritsunkel
closed
2 years ago
2
Errors in creating pred.hesc
#220
rustylakeparadox
closed
1 year ago
3
SingleR issue
#219
sivaraja23
closed
1 year ago
3
SingleR Issue.
#218
sivaraja23
closed
2 years ago
4
no common genes between 'test' and 'ref' for multiple references
#217
matt-sd-watson
closed
2 years ago
3
Generate mock data with correct number of genes
#216
ycl6
closed
2 years ago
1
Can I use logFC values from a scRNA-seq data for trainSingleR?
#215
mkim0327
closed
1 year ago
1
R killed when using parallelization
#214
ycl6
closed
2 years ago
2
Not all clusters were annotated when "per-cluster" method was used
#213
Evenlyeven
closed
1 year ago
3
Modifications of DatabaseImmuneCellExpressionData() for epithelial cells?
#212
dajsfiles
closed
1 year ago
1
Manual label harmonization
#211
akhst7
closed
2 years ago
0
Out of memory workarounds
#210
mauritsunkel
closed
2 years ago
2
Add 'rows.order' input to 'plotScoreHeatmap()'
#209
dtm2451
closed
2 years ago
2
SingleR custom reference dataset making
#208
Lumskie
closed
2 years ago
6
How to adjust the row labels of the heatmap generated by the plotScoreHeatmap of SingleR?
#207
CharlesShen-bot
closed
2 years ago
6
Tissue source of different reference data for single cell annotation
#206
amanzju
closed
2 years ago
1
Requesting training data
#205
sagnikbanerjee15
closed
2 years ago
2
Error in .setup_groups
#204
bigzero61
closed
1 year ago
1
Does SingleR work with integrated cell atlas?
#203
Chengwei94
closed
2 years ago
3
Cell annotation results will be deterministic?
#202
lkqnaruto
closed
2 years ago
1
markger gene list for annotating neuronal cells
#201
dahun73
closed
2 years ago
1
create custom reference dataset
#200
andynkili
closed
3 years ago
2
Using cell ontology with SingleR()
#199
phoebee-h
closed
3 years ago
4
Labelling SCT transformed and integrated data clusters with Single R
#198
Abnaveed
closed
3 years ago
0
plotScoreHeatmap color parameter
#197
alanaleah89
opened
3 years ago
8
umap showing grey color
#196
jjyotikataria
closed
3 years ago
1
SingleR with Seurat Object
#195
christoforos-dimitropoulos
closed
2 years ago
4
Will the annotation result be different after some cells have been filtered out?
#194
lkqnaruto
closed
3 years ago
1
SingleR on Tabula Muris Seurat object fails Error in h(simpleError(msg, call))
#193
asmariyaz23
closed
2 years ago
1
Processing of the default reference sets
#192
alexandruioanvoda
closed
1 year ago
1
Reference set contains only very few AT1 and AT2 cells, but SingleR assigned most of cells in test dataset to AT1 and AT2 cells, is it statistically and computationally reasonable?
#191
lkqnaruto
closed
3 years ago
1
object of type 'S4' is not subsettable error
#190
dahun73
closed
3 years ago
8
How to choose reference data? Should test data and refernce data coming from the same group? like using control group to infer control group cell types, using disease group to infer disease group labels?
#189
lkqnaruto
closed
1 year ago
5
Expand plotScoreHeatmap annotation colors
#188
dtm2451
closed
3 years ago
1
get colors used in heatmap
#187
pcantalupo
closed
3 years ago
9
The output of SingleR return de.genes, what does it mean?
#186
lkqnaruto
closed
3 years ago
2
How to use SingleR for integration analysis in Seurat?
#185
lkqnaruto
closed
3 years ago
4
Error in .identify_genes - number of labels must be equal to number of cells
#184
s2hui
closed
3 years ago
2
Protect against NA's in the reference labels
#183
LTLA
closed
3 years ago
0
Error in `[<-`(`*tmp*`, , u, value = rowMedians(DelayedArray(mat), cols = u == : subscript out of bounds
#182
xujingmei111
closed
3 years ago
2
Singler error when more than 900 cells
#181
huwenhuo
closed
3 years ago
2
Supplementary Information
#180
zhli12
closed
3 years ago
1
Error: subscript contains invalid names
#179
smk5g5
closed
3 years ago
4
Is it acceptable to classify 10x data using samrtseq data as reference?
#178
smk5g5
closed
3 years ago
1
Using a scalar value for argument 'center' is now deprecated.
#177
ycl6
closed
3 years ago
1
Bioconductor develop / "object of type 'S4' is not subsettable"?
#176
bbimber
closed
3 years ago
9
Release Notes
#175
TJonCooper
closed
3 years ago
1
Having issues adding cluster annotation to metadata
#174
jessicook
closed
3 years ago
2
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