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SingleR-inc
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SingleR
Clone of the Bioconductor repository for the SingleR package.
https://bioconductor.org/packages/devel/bioc/html/SingleR.html
GNU General Public License v3.0
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Cannot get SingleR to load
#173
jessicook
closed
3 years ago
2
can i annotate cells in specific cell types?
#172
hansonglee
closed
3 years ago
1
Error while installing "object I is not exported by namespace:S4Vectors
#171
binf027
closed
3 years ago
1
Error about missing scran when run with single-cell reference
#170
heathergeiger
opened
3 years ago
12
reason: database is locked
#169
zhengxinchang
closed
3 years ago
1
Error using SingleR - can't load celldex and can't use blueprint
#168
EdoPredi
closed
3 years ago
2
force to use cache data for HumanPrimaryCellAtlasData
#167
billzt
closed
3 years ago
1
error in HumanPrimaryCellAtlasData()
#166
hahia
closed
3 years ago
1
per-cell vs per-cluster annotation
#165
igordot
closed
3 years ago
3
Don't realize test when computing scaled ranks
#164
LTLA
closed
3 years ago
0
Began relaxing row name consistency during combining.
#163
LTLA
closed
3 years ago
0
Parameter genes
#162
zznx
closed
3 years ago
1
You're computing too large a percentage of total singular values, use a standard svd instead.
#161
smk5g5
closed
3 years ago
11
mathematical principle, thank you very much
#160
zznx
closed
3 years ago
12
Switch aggregateReference to use bluster
#159
LTLA
opened
3 years ago
0
Error while loading BlueprintEncodeData
#158
parvathisudha
closed
3 years ago
2
plotScoreHeatmap annotation_colors
#157
danhtruong
closed
3 years ago
2
SingleR use kmeans to
#156
zznx
closed
3 years ago
4
package or namespace load failed for ‘SingleR’ in library.dynam
#155
zznx
closed
3 years ago
2
no method found for function 'rowMedians' and signature ANY
#153
zznx
closed
3 years ago
6
Failed to install SingleR
#152
zxcary
closed
3 years ago
5
fail to fetch the reference data
#151
wu-yc
closed
3 years ago
4
Check for `ref` format, do not allow data.frame
#150
ATpoint
closed
3 years ago
1
Switch to beachmat v3 for better big-data handling.
#149
LTLA
closed
4 years ago
0
Retrieving a list of marker genes which were used assign cell type labels to clusters
#148
jdd1e16
closed
3 years ago
2
failed to load reference data
#147
RuixiangLiu01
closed
3 years ago
6
Resizing plotScoreDistribution and plotScoreHeatmap plots
#146
yasharw
closed
4 years ago
1
Error while using SingleR
#145
ruchikabhat
closed
4 years ago
17
Create SingleR object from an existing seurat object
#144
tonimaried
closed
4 years ago
2
How to cite the new version of SingleR
#143
davidepisu
closed
4 years ago
3
Different numbers of common.genes using the same reference and de.n
#142
ghost
closed
1 year ago
1
plotDeltaDistribution not found
#141
ghost
closed
3 years ago
4
best practice for shorter names
#140
wfma
closed
4 years ago
2
merging, DE analysis and clustering after integrate the data
#139
kinali
closed
4 years ago
1
Hierarchical labels for custom references
#138
dstueckm
closed
4 years ago
2
Multiple references with some references having 1 or 2 labels.
#137
danhtruong
closed
3 years ago
2
Clean up README
#136
j-andrews7
closed
4 years ago
1
Can't we feed clusters identified by Seurat to SingleR?
#135
biobug16
closed
4 years ago
4
error in load reference data set
#134
Shiywa
closed
4 years ago
5
Migrate all dataset getters to the celldex package
#133
LTLA
closed
4 years ago
0
The question for SingleR on Seurat
#132
satellite119
closed
4 years ago
7
Use singleR to detect doublets ?
#131
akramdi
closed
4 years ago
4
Having issues with normalization for Heatmap
#130
ncborcherding
closed
4 years ago
3
Dealing with Batch effect corrected data
#129
phoebee-h
closed
4 years ago
12
About non-corrected assay RNA assay counts slot generated by seurat integrated workflow using for old singler version to annotate cell issues
#128
honghh2018
closed
4 years ago
2
Want to know the unregulated and down regulated genes in particular cell type .
#127
sdabral05
closed
4 years ago
7
Separated score and delta plotting
#126
LTLA
closed
4 years ago
2
Improvements to plotScoreDistribution
#125
LTLA
closed
4 years ago
1
Functions in the previous SingleR version (SingleR1.0)
#124
Sa753
closed
4 years ago
2
The downloading of reference data is failed.
#123
Midsummer723
closed
4 years ago
19
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