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Refer for Log: https://github.com/PavlidisLab/GemmaCuration/issues/13#issuecomment-770518435
Error was raised during dataset splitting, although the splitting process itself was successful. Non-cri…
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Hi Sheng Yang, thank you for your excellent tool.
In the latest version (`commit d1b71fa`) of master branch, the `DBSLMM.R` script in `software` folder will raise several errors like "Failed to ope…
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**Describe the bug**
Running -lmm [1-3] gives the following output:
```
time ./bin/gemma-0.98.3-linux-static -lmm 1 -bfile example/mouse_hs1940 -k output/mouse_hs1940_data.cXX.txt -o lmm1
he…
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Dear Yoav,
I am using the following code to convert the kmer table to plink binary bed format:
`/data1/anik/Kmer_Gwas/bin/kmers_table_to_bed -t $kmers_table_prefix -k 25 -p resistence_anik.pheno --m…
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1. The core fusion packages and Plink2R librarys shall be installed by the following commands:
```
wget https://github.com/gusevlab/fusion_twas/archive/master.zip
unzip master.zip
cd fusion_twas-m…
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We should add leave one chromosome out support to GEMMA. From what I can tell from the source code this is not particularly hard because GEMMA already tracks chromosome information. We need to recompu…
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Hi I have installed MixMir and I keep getting this error when trying to run the testate but I don't know how to solve it. Any idea what could it be?
python MixMir.py --seqf testdat/test-utrs.fa --e…
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I'm using the Gemma run or the mistake I told you before, and I see this line of code on your manul.pdf,
bin/kmers_table_to_bed -t kmers_table -k 31-p phenotypes.pheno --maf 0.05--mac 5-b 10000000…
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I'm using the Gemma run or the mistake I told you before, and I see this line of code on your manul.pdf,
bin/kmers_table_to_bed -t kmers_table -k 31-p phenotypes.pheno --maf 0.05--mac 5-b 10000000…
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dear author
yesterday asked you why this chromosome is all 0, you said because there was no comparison with the reference genome, my idea now is to extract the kmer from the picture I showed you yest…