-
### Description of bug
If htseq-count output files contain more than the two standard columns `feature` and `count`, they are ignored. The htseq-count user has the option to add further columns for e…
-
### Description of bug
For reference - posted this on MultiQC slack - https://multiqc.slack.com/archives/C04QMP84K5L/p1697356986698759
I had a question on MultiQC parsing Parabricks bammetrics fi…
-
**Welcome to the pyGenomeTracks GitHub repository! Before opening the issue please check
that the following requirements are met :**
- [ x ] Search whether this issue (or a similar issue) has b…
-
### Description of the bug
Difference between the `nextflow.config` file where
```
tads_caller = 'insulation'
```
and the `nextflow_schema.json` where
```
"default": "hicexplorer,insulat…
-
Here is a place where we could exchange about the different modules pour DLS2 implementations.
I'm putting here the list of modules I have in mind
## Quality Controls
- [x] fastqc
## Hi-C data…
-
Hi,
Thanks for developing HicExplorer and making it available to all.
I am using
hicInfo 3.7.2 and Python 3.10.6
I am following your protocol to analyze my HiCdata.
Aligned using BWA and then…
-
Is there any software/tools that can visualize the findings from ConsensusTADs?
-
TODO list/checks for DSL2 implementation
**input**
- [x] merge multiple runs
- [x] split_fastq files
**hicpro**
- [x] dnase mode
- [x] ch_versions
- [x] stats folder
- [x] MultiQC
- [ ] c…
-
Hi,
I have n basic question here. I liked the tool a lot but having trouble with the input file generation.
I have the data from HICUP and then I can convert it to homer, Juicer, hicpe, gothic a…
-
Dear all,
I am using HiCExplorer version 3.7.2
I generated two matrices.h5 by `hicSumMatrices --matrices {list_of_matrices_to_sum} --outFileName {output_matrix}`, in order to merge 3 replicates of…