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Does **collapse_isoforms_by_sam.py** have an upper limit to the inter-exon distance it will collapse into a putative isoform? In my animal model, I have a wildtype allele that spans about 154 Kb (some…
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We (@vgainullin) have found an occurrence of case-sensitive gene names?
http://exac.broadinstitute.org/gene/ENSG00000273045
http://exac.broadinstitute.org/gene/ENSG00000241962
Both of these GEN…
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Hello Eric, thanks in advance for any help that would be offered!
The data I have:
1. RIP-seq dataset for an RNA-binding protein. (Full transcripts that co-immunoprecipitate with the protein are s…
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the Isoform clean gtf file has not gene id and transcript id, therefore how to acquire the gene id of specific trancript?
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Hi,
I would like to know the detailed rules when splicing variants are determined to be identical in TALON. If there are multiple isoforms and the start and end points of each exon are slightly diffe…
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I would be nice to add UniProt as a source, especially the following items:
* protein sequence
* potentially isoforms/isoform annotations
* function
* activity regulation
* catalytic activi…
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So here's something I need to calculate:
If you go to uniprot.org and search for human, you can download two different FASTA files:
1) Human *reviewed* sequences (20,375)
2) The full human "proteom…
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I got some output using this tools,but,I can not find a gene that could be found in NCBI.Why?
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ENSP00000328848 has 852 amino acids:
http://annotation.genomenexus.org/ensembl/transcript?proteinId=ENSP00000328848
But Ensembl has 995:
http://useast.ensembl.org/Homo_sapiens/Transcript/ProteinS…
jjgao updated
6 years ago
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The current canonical-gene endpoint only shows ensembl_canonical_gene but not the one associated with msk transcripts. We should:
- [ ] include mskcc_canonical_gene as a column in `data/grch37_ense…
inodb updated
2 years ago