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@grabear commented on [Fri Dec 07 2018](https://github.com/vallenderlab/stress-microbiome-analysis/issues/67)
Our current way of doing this is using a function and adding the data to the global envir…
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The phyloseq_to_* functions need a few updates:
- They need to have Stress/Control removed from syntax. Make dynamic for other users.
- They need to consider rank for agglomerated phyloseq objec…
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I'm not 100% sure on how to name some of the things I'm writing.
I could go with `alpha_diversity.R`. Maybe that's better than `stats.R`.
How modular do you want to get, @grabear? I've read some…
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Hello @zachary-foster,
I have microbial classification data that was generated using [Sourmash](https://github.com/dib-lab/sourmash), and now I would like to visualize with metacoder. I am struggli…
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```
[54/384] 00:46:08 | ETA: 5h | (4) metacoder [CC], metagear [I], metagenom...Error in as.octmode(mode) : 'x' cannot be coerced to class "octmode"
```
```
> traceback()
9: stop("'x' cannot b…
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Hi @zachary-foster
I am currently running through the metacoder tutorial. At the end of the compare two groups section, there is a comment right after we test for significant differences between two…
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Hi,
could you please help me interpret the attached image? The sample codes are different habitats: CL = cropland (i.e. farms), and the other codes are different forest types. we have metabarco…
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Hi Zach,
I started to use metacoder and I think it is really a very interesting tool.
I am using it with a phyloseq object, and I have a question regarding compare_groups when using data from phylo…
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Hello,
I installed version 0.2.0.9012 of metacoder because I'd like to use the calc_group_medians function. However, this version seems to have a problem with the phyloseq parser.
```
devtools::…
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