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Our new Nat. Medicine publication with Raes Lab [Tito et al. (2024)](https://www.nature.com/articles/s41591-024-02963-2) includes QMP profiling data and covariates of general interest (e.g. calprotect…
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Hi,
thanks for this great package! I am trying to use SAFE for the annotation of metadata on a low-dimensional graph representation of microbiome abundance information (similar to: https://genomebi…
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Hi!
I am trying to run GOTTCHA on a CAMI dataset (toy human microbiome) and I keep receiving the following error.
$gottcha_new/bin/gottcha.pl --threads 11 --outdi…
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Integrated Microbiome and Host Transcriptome Profiles Link Parkinson's Disease to Blautia Genus: Evidence From Feces, Blood, and Brain -- Guo et al. -- Frontiers in Microbiology
https://www.ncbi.nlm.…
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Hi. Sorry if this has been covered before but I've had a good look and tried lots of things and I can't get it to work. I've imported a QIIME biom object into phyloseq and I want to add the metadata. …
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Hi, I am new to the microbiome analysis and I have been trying to filter my microbiome data after decontam but have encountered some errors. I am in the part where I would like to remove taxa with a …
aff30 updated
2 years ago
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I encountered an issue when running qadabra, it has to do with two of the tools that are used by qadabra; corncob and metagenomeseq. I checked both log files (see underneath), but it was not clear to …
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Turnbaugh, P. J.
Ridaura, V. K.
Faith, J. J.
Rey, F. E.
Knight, R.
Gordon, J. I.
2009.
The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice
http://dx.d…
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Hi,
I am very interested with the soil-specific microbiome. Can you also share the RAST annotated genome files (gbk files) to me?
Thanks,
Xiangchen Li
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* [Home · marbl/Krona Wiki](https://github.com/marbl/Krona/wiki)
* [cpauvert/psadd: PSADD -- PhyloSeq ADDitions](https://github.com/cpauvert/psadd)
* [plot_krona: Interactive Taxonomy plot with Kron…
bbest updated
6 years ago