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Reported on Discord by bakert#2193
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### Task Description
Shoot through portcullis
### Specification/Explicit TODO
### Caution with
### Additional
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Hi I really like using portcullis but I had a quick question. I'm getting a very large amount of novel junctions, My RNA-Seq is sequenced very deeply and is from brain tissue, but portcullis is mainly…
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Error found on the latest release:
```
2019-10-18 10:15:27,974 - main_logger - picker.py:352 - INFO - setup_logger - MainProcess - Begun analysis of mikado_prepared.gtf
2019-10-18 10:15:27,974 - …
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Hi,
I tried to run the `daijin assemble`
```
daijin assemble -nd -C 20 -nd daijin.yaml
```
And then I got this error:
```
KeyError in line 40 of /home/raymond/devel/python/thirdparty/anac…
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Currently, the results obtained by Mikado v2 on rerunning it on the *H. sapiens* data prepared for the article are much worse than the published ones. This is in stark contrast to results obtained in …
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Bring back the old Iron bar portcullis and the Iron block ones
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I am also attaching the whole log file. Test done with conda python 3.6.7 on a Ubuntu bionic machine.
[test-suite.log](https://github.com/maplesond/portcullis/files/2614844/test-suite.log)
This is…
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Hi,
Thank you very much for developing such a useful piece of software. I'm running the latest version of Mikado (2) and I'm encountering a parsing problem with an XML diamond BLAST file. I'm runni…
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1. how to set the pacbio iso reads for sample_sheet.tsv used in daijin configure? just the fastq file transfer from the raw bam file or the all_quivered_hq_lq.fastq file output by isoseq3?
2. when bo…