-
I would like to take a biopax file and get a report of
1. which ID prefixes are used, how often, and are they well-formed
2. of the IDs that reference ontology terms, are these terms valid, in the…
-
Hi,
We got an error report where Alphafold with `multimer mode` and `Output per-residue confidence scores` cannot generated residue_scores because of `KeyError: 'model_1'`.
Are the multimer mode and…
-
From :
```
Checking out Revision 9a395f83ccd83bca568056f178757dd032007140 (refs/remotes/origin/branch_7x)
[...]
[junit4] Suite: org.apache.lucene.analysis.core.TestRandomChains
[junit4] 2> TES…
-
The Save Molecule dialog box is to some extent able to use the file extension to guess the requested file formal, e.g. .xyz, tmol, gau, without having to select the specific format from the drop-down …
-
### Bug summary
MMPBSA_Error /home/shashank_lab/anaconda3/envs/gmxMMPBSA/bin/tleap failed when querying _GMXMMPBSA_leap.in.
Check the gmx_MMPBSA.log file to report the problem.
### Terminal output
…
-
When running podock tests', there are output files '.pdb' and '.sdf' created at various occasions.
Is there any documentation for these file formats? I couldn't find any browsing FAQ and some more …
-
Hello,
in some cases, the ``PDBFile`` seems to have difficulties retrieving bond information from PDB files. To be more precise, this occurred when trying to read a PDB file returned from the ClusP…
-
Hi,
I´m newbie with tinker. I´m unable to run properly pdbxyz routine with the peptide.pdb example.
Following message appears:
#############################################################…
-
Our team has encountered an error with a python script we wrote for sending GFF files directly to the annotation track of an Apollo organism. The GFF consists of gene features with an mRNA as a subfea…
-
BPO | [37877](https://bugs.python.org/issue37877)
--- | :---
Nosy | @ronaldoussoren
*Note: these values reflect the state of the issue at the time it was migrated and might not reflect the current st…