-
The correction phase gives segmentation faults. I've tried running Canu on a Slurm cluster with different mem/cpu settings, but also on a single node. All failed because of a seg faults during correct…
-
I’m working on a bug assigned to STAT. The bug relates to the fact that
Launch does not work on SLURM.
I’ve done significant testing, and have found that Launchmon is getting stuck in a read to …
-
## Expected Behavior
by example, without spython
this executes the %runscript in my container with args
```
$singularity instance.run image.img --nv test
$singularity run instance://test [args.…
-
As a first cut to see if we could at least get started, Frank and I just went through a little testing on quartz, using the installed versions of both spindle and flux, to see what they would do if we…
-
Hi.
My team faced the problem with sockeye training. We have tried this approach:
module load python-3.6.0
python -m sockeye.train -s bpe.cl-tc-tok-train.et \ ...
But it gave us such mistake:
…
-
I'd like to add this minor patch to allow compilation to proceed on FreeBSD systems.
```shell
--- src/OSD/OSD_MemInfo.cxx.orig 2018-02-13 18:38:59 UTC
+++ src/OSD/OSD_MemInfo.cxx
@@ -29,6 +29,8 …
-
Not sure if you've had issues with zombie-processes being left behind on linux systems, but per our stackexchange thread, I thought this might be useful for the package. Note that it would require `i…
-
[zeromq.org](http://zeromq.org/)
-
Hi,
I am using the following command:
`./canu -useGrid=0 -p BC05 -d /n/scratch2/dct7/Run11_Canu/BC05_AC347 genomeSize=9000 contigFilter="2 1000 1.0 1.0 2" -nanopore-raw /n/scratch2/dct7/Run11_C…
-
Hi @maosongfu,
I get some strange issues when I submit my topology to the remote aurora cluster, which have only one machine currently.
I have attached some of my config files below. I am guessing I…