-
Hi:
I'm always struggling to find a less subjective way to do cell filtering? Say, if i have 14 samples in an experiment, can I set sample-specific thresholds for quality metrics like nFeature_RNA,…
-
I have did a new install of bcbio with datatarget snrnaseq, and did a tools update bcbio_nextgen.py upgrade --tools
However, I get the following error. I can find atropos in the tools/bin director…
-
I have a problem in which I am trying to use the zinbwave package for differential expression analysis from snRNAseq data, but I cannot get the necessary observational weights.
I am using: R versio…
-
Hi,
I have been playing around with `geosketch` with the aim of speeding up the creation of large single cell reference panoramas with `scanorama`.
I am using the first 20 components from PCA (i…
-
Create the initial HuBMAP query API endpoint. At a minimum we need an endpoint running in a Docker container that serves a single service such as GET /entity/....
-All entity types
-All entities of …
-
Hi guys
I'd like to run the srnaseq pipeline on reads that have already been previously trimmed. I tried to disable trimming by specifying `trim_reads: false` in my .yaml config file but the pipeline…