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from https://github.com/dib-lab/sourmash/issues/1226#issuecomment-748382043, @luizirber says:
>The challenge then becomes recalculating the reference sigs with smaller scaled values (100?), and effic…
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Can't wait to try the new version!
```
$ mamba install sourmash # v4.5.0
$ sourmash -v
Traceback (most recent call last):
File "/home/shenwei/app/miniconda3/envs/kmcp/bin/sourmash", line 7…
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we can force `sourmash` commands to load .sig/.sig.gz files from under a directory, and (with `-f`) we can ask sourmash to try to load other files that MIGHT be JSON files. But that doesn't try to loa…
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While trying to load data using `requests` I hit this error:
```python
import requests
import sourmash_lib
data = requests.get('https://wort.oxli.org/view/sra/ERR022107')
sig = sourmash_lib.…
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**Zero to nf-core pipeline**
```
mamba create -n nf nf-core nextflow prettier
nf-core create
? Workflow name seqqc
? Description Quality control for sequencing data
? Author Arcadia Science
…
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Hi,
I was wondering about the order in which the arguments to `sourmash
sketch dna` are parsed. When we have a command like this: `sourmash
sketch dna --merge ../dat/query/*fastq -o
../non-exist…
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see https://github.com/sourmash-bio/sourmash/pull/2696 for example in plugins - we should do this for sourmash too!
for example,
```
Need help? Have questions? Ask at http://github.com/sourmash/i…
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Hello!
I am trying to set up a binder using sourmash, and I am getting the following error:
```
Traceback (most recent call last):
File "/srv/conda/envs/notebook/bin/sourmash", line 7, in
…
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Dear sourmash team,
I've recently attempted to create a minimal test dataset and encountered an error when using `sourmash gather`.
Specifically, it raises an `AssertionError`.
I think that t…
vmikk updated
11 months ago
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the dendrogram annotation, display, and cut code [here](https://github.com/ctb/2017-sourmash-cluster/blob/master/species-clustering.ipynb) is proving to be both robust and useful; should probably jus…