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**Is your feature request related to a problem? Please describe.**
To bring EAGER2 to feature parity with EAGER1, a crucial step is genotyping and the creation of VCF files. EAGER1 used GATK UnifiedG…
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Hi,
I'm trying to convert a modern genome to ancient; is it possible with Gargammel or does it only simulate an ancient genome from scratch?
The reason I need this is that I want to have known s…
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For ancient samples (ping @awohns), we want some way to specify that the node times are not 0. The obvious place to do this is in `SampleData.add_individual()`, but the problem is that node times are …
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The `adapter_removal` task terminates in an unexpected manner:
```
Error executing process > 'adapter_removal (COD092E1bL1i69_L7)'
Caused by:
Process `adapter_removal (COD092E1bL1i69_L7)` t…
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**Explanation of the issue:**
Event "Senators Break Ranks": most notably by Robert Wagner-->most notably Robert Wagner
Event "Socialist Revolution in Cuba": weeks on instability-->weeks of instabi…
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Hi minimap2 experts,
I wonder if it makes any sense to use minimap2 for aDNA short read mapping. For a long time, people have been using bwa for aDNA mapping, with the following parameters -l 16500…
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**Explanation of the issue:**
Focus "Adna Chaffee Reform Plan": compliment-->complement
Event "The War Department Relocates to the Main Navy and Munitions Buildings": having been order-->having be…
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When I activate the Paratext Bridge, I always get the same chapter that is copied, not merged. It is Neh. 12.
![Screenshot-1](https://user-images.githubusercontent.com/4662309/70541771-9098d680-1b5…
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Hi. I'm working on aDNA and I have launched AdapterRemoval on raw reads (paired end reads).
This is the tipe of pipeline I used:
nohup directory/adapterremoval-2.2.4/build/AdapterRemoval --threads…
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**Az igény összefoglalása / Summary of the request**
Az Online számla interfész rengeteg típusú WARN/ERROR üzenetet küldhet vissza. Az ügyfeleink döntő hányada ha egy ilyen választ lát, gyakorlatilag…