MikkelSchubert adapterremoval issues

MikkelSchubert / adapterremoval

AdapterRemoval v2 - rapid adapter trimming, identification, and read merging

http://adapterremoval.readthedocs.io/

GNU General Public License v3.0

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issues

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Feature request: demultiplexing in both forward and reverse directions

#68 krdav opened 3 weeks ago
7
Any reason not to accept ambiguous bases?

#67 7PintsOfCherryGarcia opened 1 month ago
7
adapterremoval add windows version

#66 junjunlab opened 1 year ago
2
support .gz format fastq as input

#65 junjunlab closed 1 year ago
1
[feature request] Add support for GNU make's staged install via DESTDIR flag

#64 kbipinkumar closed 2 months ago
1
New version of catch.hpp needed for glibc >= 2.34

#63 tillea closed 2 years ago
1
Update Catch to v2.13.8

#62 loganrosen closed 2 years ago
1
How to interpret the outputs of the multiple inputs after trimming?

#61 hyjforesight closed 2 years ago
4
combine with other QC tools

#60 binlu1981 closed 2 years ago
1
remove adapters sequences from BGI/MGI platform

#59 binlu1981 closed 2 years ago
1
AdapterRemoval v3 Feedback

#58 jfy133 opened 2 years ago
12
installation Adapterremoval with Conda

#57 marco2985 closed 2 years ago
2
How to demultiplexing paired-end reads in mixed orientation?

#56 rexhancx closed 2 years ago
4
collapse with SE reads

#55 fgvieira closed 3 years ago
3
Adapters Not Being Trimmed (Apparently)?

#54 g-pacheco closed 2 years ago
2
Input file is overwritten and cut off

#53 TCLamnidis closed 2 years ago
3
Add option for singular 'combined' output FASTQ files

#52 jfy133 opened 3 years ago
5
Support JSON log output

#51 jfy133 opened 3 years ago
3
Internal barcodes

#50 apeltzer opened 3 years ago
5
Adapter Removal running error

#49 tf1993614 closed 2 years ago
2
homebrew/science was deprecated

#48 rhythms06 opened 3 years ago
1
use install instead of cp//mv//mkdir

#47 EricDeveaud closed 3 years ago
1
stdout and stderr reversed?

#46 UdoGi closed 3 years ago
1
Added Architecture "ppc64le"

#45 dthadi3 closed 3 years ago
4
--combined-output generates strange GC% distribution in fastqc reports

#44 cgrootcrego closed 3 years ago
4
AdapterRemoval returning junk reads in paired1 and 2.truncated files

#43 rmaustin closed 3 years ago
2
basic_ios::clear: iostream error

#42 aemmons90 closed 4 years ago
6
version number not up-to-date

#41 robinengler closed 4 years ago
1
Incorrect trimming of adapters when alignment contains gaps

#40 sc13-bioinf closed 5 years ago
2
on documentation of trimwindows

#39 jeffinrockey opened 5 years ago
0
Possible to uninstall/reinstall?

#38 anthrograd20 closed 4 years ago
3
AdapterRemoval doesn't work with paired end reads >1GB

#37 Giorgia94 closed 5 years ago
2
Switch conda channel to Bioconda

#36 maxibor closed 5 years ago
1
Test suite fails in i386 architecture with strange replacement of "(" by "'"

#35 tillea closed 5 years ago
5
--identify-adapters doesn't respect --mate-separator

#34 yonist closed 5 years ago
1
How to construct the adapter list/specify adapters

#33 yonist closed 5 years ago
2
Do not cut the base at the read 5' head

#32 lingbl closed 5 years ago
10
Adapter lists is interpreted differently compared to command line input

#31 KarolisM closed 5 years ago
3
No result after passing in a sample with no adapters

#30 billytaj closed 5 years ago
9
Cannot demultiplex large number of barcode combinations

#29 martinclausen2 closed 5 years ago
8
Mate mismatch on multi-file mode

#28 billytaj closed 3 years ago
6
What means Length 0 in the read distribution field under the settings file report

#27 VictorGoitea closed 5 years ago
1
Bioconda package is there

#26 apeltzer closed 5 years ago
1
TravisCI for conda installation

#25 maxibor closed 6 years ago
0
conda install update

#24 maxibor closed 6 years ago
0
Conda installer

#23 maxibor closed 6 years ago
7
Combining --identify-adapters with trimming

#22 nickjhathaway closed 6 years ago
4
Make it clearer what adapters are in the default queries

#21 mmokrejs opened 6 years ago
3
No sudo permission

#20 ghost closed 6 years ago
3
Trimming reads on 3' and 5' ends

#19 apeltzer closed 4 years ago
4