-
Hi,
I got an error with samtools 1.18-7-gae19296 using htslib 1.18-17-g5acbc15, both on mac and centos7
I used the exact commands on Centos
On MAC I got a samtools config error (ld: unknown optio…
-
I am trying to install Pindel, using the following steps:
First compile samtools:
```
mkdir /mnt/nexenta/haars001/projects/yeast_evolution/ && cd $_
git clone https://github.com/samtools/samtools.gi…
-
It does not seem one needs any of the following to link:
`$(HTSLIB)/libhts.a -lcurses -lm -lz -lpthread -lcurl -lssl -lcrypto`, only `-lbam` is needed.
-
Hi,
So I recently pulled the Singularity image of PAV `2.4.2.1` which I have used in parallel on a "large" number of assemblies. All the jobs eventually failed after some time so I restarted it on …
-
```
Hi! I'm trying to upgrade to version 2.3.3 (from 2.3) on our cluster, and am
getting the following error when I try to install to a custom location:
How do I fix this???
Thanks
python setup.py…
-
HI, when I try to do the strand flip process by using the pre-phased shapeit2 data, with the reference panel as 1000 genome phase3 (.vcf.gz format), I encounter the following problem. Please help me, …
-
The [`LinearIndex` class is public](https://github.com/samtools/htsjdk/blob/master/src/main/java/htsjdk/samtools/LinearIndex.java), but there is no public method that allows one to get a `LinearIndex`…
-
### Description of feature
Hi. I appreciate your effort in developing this pipeline.
I noticed that the cram file size generated by Sarek is much larger than the one from another pipeline.
For exam…
-
i am trying to build and package trinityrnaseq for Archlinux. when running make i am getting following error. apparently its similar to issue #1025 which has been marked as fixed.
i am using gcc 1…
-
I took a 150kb region from _H. saltator_ and simulated Illumina reads from the transcripts encoded in that region. The idea was to use the data for instruction: teach the students basic RNA-seq analys…